2X8NA

Solution nmr structure of uncharacterized protein cv0863 from chromobacterium violaceum. northeast structural genomics target (nesg) target cvt3. ocsp target cv0863.
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
109
structure length
109
Chain Sequence
MEVSANELEAASSRMEMLQREYSTLRSVQYRSEEGVIVFILANDRELKFRPDDLQATYGATPEQLREIEISPSGLGVYFETLEEDVSLIGLLEGRRGSAKWMAEHPLAS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Solution NMR Structure of Uncharacterized Protein Cv0863 from Chromobacterium Violaceum
rcsb
molecule tags Structural genomics
source organism Chromobacterium violaceum atcc 12472
molecule keywords CV0863
total genus 21
structure length 109
sequence length 109
ec nomenclature
pdb deposition date 2010-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF10387 DUF2442 Protein of unknown function (DUF2442)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.2020.20 Alpha Beta 2-Layer Sandwich NE0471 N-terminal domain-like NE0471 N-terminal domain-like 2x8nA01
2X8NA 3K8RA
chains in the Genus database with same CATH superfamily
3N6WA 3MS5A 2AUWA 4BGKA 2X8NA 4BG1A 3LUUA 3K8RA 4C8RA 4BHFA 4BHIA 4C5WA 3O2GA 4BGMA 4CWDA 4BHGA
chains in the Genus database with same CATH topology
3N6WA 3MS5A 4BGKA 2X8NA 4BG1A 3LUUA 3K8RA 4C8RA 4BHFA 4BHIA 4C5WA 3O2GA 4BGMA 4CWDA 4BHGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X8N A;  3K8R A; 
#chains in the Genus database with same CATH topology
 3N6W A;  3MS5 A;  2AUW A;  4BGK A;  2X8N A;  4BG1 A;  3LUU A;  3K8R A;  4C8R A;  4BHF A;  4BHI A;  4C5W A;  3O2G A;  4BGM A;  4CWD A;  4BHG A; 
#chains in the Genus database with same CATH homology
 3N6W A;  3MS5 A;  4BGK A;  2X8N A;  4BG1 A;  3LUU A;  3K8R A;  4C8R A;  4BHF A;  4BHI A;  4C5W A;  3O2G A;  4BGM A;  4CWD A;  4BHG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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