3LTIA

Crystal structure of the escherichia coli rna polymerase beta subunit beta2-betai4 domains
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
293
structure length
274
Chain Sequence
MSPGVFFDSDVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGVYVEGRRITARHIRQLEKDDVKLIEVPVEYIAGVVADYIDESTGELICAANMELSLDLLALSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMFNRSLLREEIEGSGILSDDIIDVMLIDIRNGGEVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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connected with : NaN
molecule tags Transferase
source organism Escherichia coli
publication title Complete structural model of Escherichia coli RNA polymerase from a hybrid approach.
pubmed doi rcsb
molecule keywords DNA-directed RNA polymerase subunit beta
total genus 59
structure length 274
sequence length 293
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2010-02-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1110.10 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 RNA polymerase Rpb2, domain 2 3ltiA01
4BY1B 1TWAB 3S2DB 3GTOB 4A3DB 3HOXB 3GTGB 1HQMC 2A69C 3HOVB 4A93B 4LJZC 4QIWB 2R92B 4A3KB 3S14B 3GTMB 3GTKB 2VUMB 3GTPB 4A3IB 3RZDB 4C3JB 1IW7C 1TWCB 2JA8B 3GTLB 2B63B 2E2IB 1R9TB 2A68C 3EQLC 3CQZB 5M3FB 3S1NB 5C44B 2WB1B 1I6HB 3M3YB 4A3EB 1TWFB 2Y0SB 3I4MB 1Y1WB 3LTIA 2NVYB 1SFOB 3S1RB 3PO2B 2R93B 1TWHB 3S15B 1YNJC 4G7ZC 4C2MB 1YNNC 3S1QB 4C3IB 5C3EB 4KBMA 2JA7B 2NVQB 5M5WB 2E2JB 3PO3B 2CW0C 2NVXB 2YU9B 5C4JB 3M4OB 3H0GB 1K83B 3H3VC 4A3FB 3S16B 1Y1VB 3HKZB 3S1MB 3HOZB 5M5YB 3HOWB 2PPBC 4GZYC 2R7ZB 5M3MB 3I4NB 3DXJC 1TWGB 1I3QB 3S17B 4BBRB 3GTJB 2O5IC 2O5JC 3HOUB 2E2HB 2PMZB 1WCMB 2JA5B 3K7AB 4A3GB 3RZOB 4A3MB 4C3HB 3S2HB 4G7OC 4KBJA 4AYBB 2JA6B 4G7HC 5M5XB 1I6VC 2A6HC 2WAQB 1SMYC 4BBSB 1ZYRC 2A6EC 4LK1C 2NVTB 3HOYB 4Y7NB 3GTQB 4BY7B 2BE5C 5C4XB 1I50B 4A3BB 3FKIB 4A3JB
chains in the Genus database with same CATH superfamily
4BY1B 1TWAB 3S2DB 3GTOB 4A3DB 3HOXB 3GTGB 1HQMC 2A69C 3HOVB 4A93B 4LJZC 4QIWB 2R92B 4A3KB 3S14B 3GTMB 3GTKB 2VUMB 3GTPB 4A3IB 3RZDB 4C3JB 1IW7C 1TWCB 2JA8B 3GTLB 2B63B 2E2IB 1R9TB 2A68C 3EQLC 3CQZB 5M3FB 3S1NB 5C44B 2WB1B 1I6HB 3M3YB 4A3EB 1TWFB 2Y0SB 3I4MB 1Y1WB 3LTIA 2NVYB 1SFOB 3S1RB 3PO2B 2R93B 1TWHB 3S15B 1YNJC 4G7ZC 4C2MB 1YNNC 3S1QB 4C3IB 5C3EB 4KBMA 2JA7B 2NVQB 5M5WB 2E2JB 3PO3B 2CW0C 2NVXB 2YU9B 5C4JB 3M4OB 3H0GB 1K83B 3H3VC 4A3FB 3S16B 1Y1VB 3HKZB 3S1MB 3HOZB 5M5YB 3HOWB 2PPBC 4GZYC 2R7ZB 5M3MB 3I4NB 3DXJC 1TWGB 1I3QB 3S17B 4BBRB 3GTJB 2O5IC 2O5JC 3HOUB 2E2HB 2PMZB 1WCMB 2JA5B 3K7AB 4A3GB 3RZOB 4A3MB 4C3HB 3S2HB 4G7OC 4KBJA 4AYBB 2JA6B 4G7HC 5M5XB 1I6VC 2A6HC 2WAQB 1SMYC 4BBSB 1ZYRC 2A6EC 4LK1C 2NVTB 3HOYB 4Y7NB 3GTQB 4BY7B 2BE5C 5C4XB 1I50B 4A3BB 3FKIB 4A3JB
chains in the Genus database with same CATH topology
4BY1B 1TWAB 3S2DB 3GTOB 4A3DB 3HOXB 3GTGB 1HQMC 2A69C 3HOVB 4A93B 4LJZC 4QIWB 2R92B 4A3KB 3S14B 3GTMB 3GTKB 2VUMB 3GTPB 4A3IB 3RZDB 4C3JB 1IW7C 1TWCB 2JA8B 3GTLB 2B63B 2E2IB 1R9TB 2A68C 3EQLC 3CQZB 5M3FB 3S1NB 5C44B 2WB1B 1I6HB 3M3YB 4A3EB 1TWFB 2Y0SB 3I4MB 1Y1WB 3LTIA 2NVYB 1SFOB 3S1RB 3PO2B 2R93B 1TWHB 3S15B 1YNJC 4G7ZC 4C2MB 1YNNC 3S1QB 4C3IB 5C3EB 4KBMA 2JA7B 2NVQB 5M5WB 2E2JB 3PO3B 2CW0C 2NVXB 2YU9B 5C4JB 3M4OB 3H0GB 1K83B 3H3VC 4A3FB 3S16B 1Y1VB 3HKZB 3S1MB 3HOZB 5M5YB 3HOWB 2PPBC 4GZYC 2R7ZB 5M3MB 3I4NB 3DXJC 1TWGB 1I3QB 3S17B 4BBRB 3GTJB 2O5IC 2O5JC 3HOUB 2E2HB 2PMZB 1WCMB 2JA5B 3K7AB 4A3GB 3RZOB 4A3MB 4C3HB 3S2HB 4G7OC 4KBJA 4AYBB 2JA6B 4G7HC 5M5XB 1I6VC 2A6HC 2WAQB 1SMYC 4BBSB 1ZYRC 2A6EC 4LK1C 2NVTB 3HOYB 4Y7NB 3GTQB 4BY7B 2BE5C 5C4XB 1I50B 4A3BB 3FKIB 4A3JB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4BY1 B;  1TWA B;  3S2D B;  3GTO B;  4A3D B;  3HOX B;  3GTG B;  1HQM C;  2A69 C;  3HOV B;  4A93 B;  4LJZ C;  4QIW B;  2R92 B;  4A3K B;  3S14 B;  3GTM B;  3GTK B;  2VUM B;  3GTP B;  4A3I B;  3RZD B;  4C3J B;  1IW7 C;  1TWC B;  2JA8 B;  3GTL B;  2B63 B;  2E2I B;  1R9T B;  2A68 C;  3EQL C;  3CQZ B;  5M3F B;  3S1N B;  5C44 B;  2WB1 B;  1I6H B;  3M3Y B;  4A3E B;  1TWF B;  2Y0S B;  3I4M B;  1Y1W B;  3LTI A;  2NVY B;  1SFO B;  3S1R B;  3PO2 B;  2R93 B;  1TWH B;  3S15 B;  1YNJ C;  4G7Z C;  4C2M B;  1YNN C;  3S1Q B;  4C3I B;  5C3E B;  4KBM A;  2JA7 B;  2NVQ B;  5M5W B;  2E2J B;  3PO3 B;  2CW0 C;  2NVX B;  2YU9 B;  5C4J B;  3M4O B;  3H0G B;  1K83 B;  3H3V C;  4A3F B;  3S16 B;  1Y1V B;  3HKZ B;  3S1M B;  3HOZ B;  5M5Y B;  3HOW B;  2PPB C;  4GZY C;  2R7Z B;  5M3M B;  3I4N B;  3DXJ C;  1TWG B;  1I3Q B;  3S17 B;  4BBR B;  3GTJ B;  2O5I C;  2O5J C;  3HOU B;  2E2H B;  2PMZ B;  1WCM B;  2JA5 B;  3K7A B;  4A3G B;  3RZO B;  4A3M B;  4C3H B;  3S2H B;  4G7O C;  4KBJ A;  4AYB B;  2JA6 B;  4G7H C;  5M5X B;  1I6V C;  2A6H C;  2WAQ B;  1SMY C;  4BBS B;  1ZYR C;  2A6E C;  4LK1 C;  2NVT B;  3HOY B;  4Y7N B;  3GTQ B;  4BY7 B;  2BE5 C;  5C4X B;  1I50 B;  4A3B B;  3FKI B;  4A3J B; 
#chains in the Genus database with same CATH topology
 4BY1 B;  1TWA B;  3S2D B;  3GTO B;  4A3D B;  3HOX B;  3GTG B;  1HQM C;  2A69 C;  3HOV B;  4A93 B;  4LJZ C;  4QIW B;  2R92 B;  4A3K B;  3S14 B;  3GTM B;  3GTK B;  2VUM B;  3GTP B;  4A3I B;  3RZD B;  4C3J B;  1IW7 C;  1TWC B;  2JA8 B;  3GTL B;  2B63 B;  2E2I B;  1R9T B;  2A68 C;  3EQL C;  3CQZ B;  5M3F B;  3S1N B;  5C44 B;  2WB1 B;  1I6H B;  3M3Y B;  4A3E B;  1TWF B;  2Y0S B;  3I4M B;  1Y1W B;  3LTI A;  2NVY B;  1SFO B;  3S1R B;  3PO2 B;  2R93 B;  1TWH B;  3S15 B;  1YNJ C;  4G7Z C;  4C2M B;  1YNN C;  3S1Q B;  4C3I B;  5C3E B;  4KBM A;  2JA7 B;  2NVQ B;  5M5W B;  2E2J B;  3PO3 B;  2CW0 C;  2NVX B;  2YU9 B;  5C4J B;  3M4O B;  3H0G B;  1K83 B;  3H3V C;  4A3F B;  3S16 B;  1Y1V B;  3HKZ B;  3S1M B;  3HOZ B;  5M5Y B;  3HOW B;  2PPB C;  4GZY C;  2R7Z B;  5M3M B;  3I4N B;  3DXJ C;  1TWG B;  1I3Q B;  3S17 B;  4BBR B;  3GTJ B;  2O5I C;  2O5J C;  3HOU B;  2E2H B;  2PMZ B;  1WCM B;  2JA5 B;  3K7A B;  4A3G B;  3RZO B;  4A3M B;  4C3H B;  3S2H B;  4G7O C;  4KBJ A;  4AYB B;  2JA6 B;  4G7H C;  5M5X B;  1I6V C;  2A6H C;  2WAQ B;  1SMY C;  4BBS B;  1ZYR C;  2A6E C;  4LK1 C;  2NVT B;  3HOY B;  4Y7N B;  3GTQ B;  4BY7 B;  2BE5 C;  5C4X B;  1I50 B;  4A3B B;  3FKI B;  4A3J B; 
#chains in the Genus database with same CATH homology
 4BY1 B;  1TWA B;  3S2D B;  3GTO B;  4A3D B;  3HOX B;  3GTG B;  1HQM C;  2A69 C;  3HOV B;  4A93 B;  4LJZ C;  4QIW B;  2R92 B;  4A3K B;  3S14 B;  3GTM B;  3GTK B;  2VUM B;  3GTP B;  4A3I B;  3RZD B;  4C3J B;  1IW7 C;  1TWC B;  2JA8 B;  3GTL B;  2B63 B;  2E2I B;  1R9T B;  2A68 C;  3EQL C;  3CQZ B;  5M3F B;  3S1N B;  5C44 B;  2WB1 B;  1I6H B;  3M3Y B;  4A3E B;  1TWF B;  2Y0S B;  3I4M B;  1Y1W B;  3LTI A;  2NVY B;  1SFO B;  3S1R B;  3PO2 B;  2R93 B;  1TWH B;  3S15 B;  1YNJ C;  4G7Z C;  4C2M B;  1YNN C;  3S1Q B;  4C3I B;  5C3E B;  4KBM A;  2JA7 B;  2NVQ B;  5M5W B;  2E2J B;  3PO3 B;  2CW0 C;  2NVX B;  2YU9 B;  5C4J B;  3M4O B;  3H0G B;  1K83 B;  3H3V C;  4A3F B;  3S16 B;  1Y1V B;  3HKZ B;  3S1M B;  3HOZ B;  5M5Y B;  3HOW B;  2PPB C;  4GZY C;  2R7Z B;  5M3M B;  3I4N B;  3DXJ C;  1TWG B;  1I3Q B;  3S17 B;  4BBR B;  3GTJ B;  2O5I C;  2O5J C;  3HOU B;  2E2H B;  2PMZ B;  1WCM B;  2JA5 B;  3K7A B;  4A3G B;  3RZO B;  4A3M B;  4C3H B;  3S2H B;  4G7O C;  4KBJ A;  4AYB B;  2JA6 B;  4G7H C;  5M5X B;  1I6V C;  2A6H C;  2WAQ B;  1SMY C;  4BBS B;  1ZYR C;  2A6E C;  4LK1 C;  2NVT B;  3HOY B;  4Y7N B;  3GTQ B;  4BY7 B;  2BE5 C;  5C4X B;  1I50 B;  4A3B B;  3FKI B;  4A3J B;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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