The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
59
|
sequence length |
293
|
structure length |
274
|
Chain Sequence |
MSPGVFFDSDVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGVYVEGRRITARHIRQLEKDDVKLIEVPVEYIAGVVADYIDESTGELICAANMELSLDLLALSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMFNRSLLREEIEGSGILSDDIIDVMLIDIRNGGEVD
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Complete structural model of Escherichia coli RNA polymerase from a hybrid approach.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Escherichia coli
|
| molecule keywords |
DNA-directed RNA polymerase subunit beta
|
| total genus |
59
|
| structure length |
274
|
| sequence length |
293
|
| ec nomenclature |
ec
2.7.7.6: DNA-directed RNA polymerase. |
| pdb deposition date | 2010-02-16 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Alpha-Beta Complex | Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 | RNA polymerase Rpb2, domain 2 |
#chains in the Genus database with same CATH superfamily 5M5X B; 4C3H B; 1K83 B; 2PPB C; 1YNN C; 3S2D B; 3RZO B; 4G7H C; 1TWH B; 2Y0S B; 1ZYR C; 3H0G B; 2JA6 B; 3HOZ B; 3S1N B; 3M4O B; 1WCM B; 4GZY C; 5M3F B; 4C3I B; 2JA7 B; 2R92 B; 5M5W B; 2E2H B; 1TWA B; 1I50 B; 2WB1 B; 2JA5 B; 1IW7 C; 4C3J B; 2E2I B; 3PO2 B; 4G7O C; 3S17 B; 2A69 C; 2A6H C; 4A3E B; 3GTK B; 4A3G B; 5C4X B; 1I6V C; 3S15 B; 4A3M B; 1YNJ C; 1SFO B; 5M3M B; 3HOY B; 3HOW B; 3GTP B; 2NVY B; 3S1Q B; 3I4N B; 4KBJ A; 2A68 C; 1TWF B; 4A3D B; 2BE5 C; 3I4M B; 2E2J B; 1I3Q B; 3HOV B; 4A3J B; 4A3I B; 3HKZ B; 4A3K B; 2VUM B; 1R9T B; 5C44 B; 3M3Y B; 4BY1 B; 4C2M B; 3GTQ B; 3HOX B; 2CW0 C; 1Y1W B; 4G7Z C; 4BY7 B; 2A6E C; 3FKI B; 4LJZ C; 2NVX B; 4A93 B; 3LTI A; 4LK1 C; 2B63 B; 3S1R B; 3GTM B; 1Y1V B; 4AYB B; 4QIW B; 3DXJ C; 5C4J B; 2JA8 B; 3H3V C; 4A3B B; 2O5J C; 3S1M B; 4BBS B; 3K7A B; 3GTL B; 3GTG B; 4BBR B; 1SMY C; 3GTJ B; 4Y7N B; 2R93 B; 2YU9 B; 4KBM A; 2O5I C; 3S14 B; 5M5Y B; 3RZD B; 3GTO B; 2NVT B; 3S2H B; 4A3F B; 5C3E B; 1I6H B; 1HQM C; 3HOU B; 3CQZ B; 2NVQ B; 3PO3 B; 1TWC B; 2PMZ B; 3EQL C; 2WAQ B; 2R7Z B; 3S16 B; 1TWG B; #chains in the Genus database with same CATH topology 5M5X B; 4C3H B; 1K83 B; 2PPB C; 1YNN C; 3S2D B; 3RZO B; 4G7H C; 1TWH B; 2Y0S B; 1ZYR C; 3H0G B; 2JA6 B; 3HOZ B; 3S1N B; 3M4O B; 1WCM B; 4GZY C; 5M3F B; 4C3I B; 2JA7 B; 2R92 B; 5M5W B; 2E2H B; 1TWA B; 1I50 B; 2WB1 B; 2JA5 B; 1IW7 C; 4C3J B; 2E2I B; 3PO2 B; 4G7O C; 3S17 B; 2A69 C; 2A6H C; 4A3E B; 3GTK B; 4A3G B; 5C4X B; 1I6V C; 3S15 B; 4A3M B; 1YNJ C; 1SFO B; 5M3M B; 3HOY B; 3HOW B; 3GTP B; 2NVY B; 3S1Q B; 3I4N B; 4KBJ A; 2A68 C; 1TWF B; 4A3D B; 2BE5 C; 3I4M B; 2E2J B; 1I3Q B; 3HOV B; 4A3J B; 4A3I B; 3HKZ B; 4A3K B; 2VUM B; 1R9T B; 5C44 B; 3M3Y B; 4BY1 B; 4C2M B; 3GTQ B; 3HOX B; 2CW0 C; 1Y1W B; 4G7Z C; 4BY7 B; 2A6E C; 3FKI B; 4LJZ C; 2NVX B; 4A93 B; 3LTI A; 4LK1 C; 2B63 B; 3S1R B; 3GTM B; 1Y1V B; 4AYB B; 4QIW B; 3DXJ C; 5C4J B; 2JA8 B; 3H3V C; 4A3B B; 2O5J C; 3S1M B; 4BBS B; 3K7A B; 3GTL B; 3GTG B; 4BBR B; 1SMY C; 3GTJ B; 4Y7N B; 2R93 B; 2YU9 B; 4KBM A; 2O5I C; 3S14 B; 5M5Y B; 3RZD B; 3GTO B; 2NVT B; 3S2H B; 4A3F B; 5C3E B; 1I6H B; 1HQM C; 3HOU B; 3CQZ B; 2NVQ B; 3PO3 B; 1TWC B; 2PMZ B; 3EQL C; 2WAQ B; 2R7Z B; 3S16 B; 1TWG B; #chains in the Genus database with same CATH homology 5M5X B; 4C3H B; 1K83 B; 2PPB C; 1YNN C; 3S2D B; 3RZO B; 4G7H C; 1TWH B; 2Y0S B; 1ZYR C; 3H0G B; 2JA6 B; 3HOZ B; 3S1N B; 3M4O B; 1WCM B; 4GZY C; 5M3F B; 4C3I B; 2JA7 B; 2R92 B; 5M5W B; 2E2H B; 1TWA B; 1I50 B; 2WB1 B; 2JA5 B; 1IW7 C; 4C3J B; 2E2I B; 3PO2 B; 4G7O C; 3S17 B; 2A69 C; 2A6H C; 4A3E B; 3GTK B; 4A3G B; 5C4X B; 1I6V C; 3S15 B; 4A3M B; 1YNJ C; 1SFO B; 5M3M B; 3HOY B; 3HOW B; 3GTP B; 2NVY B; 3S1Q B; 3I4N B; 4KBJ A; 2A68 C; 1TWF B; 4A3D B; 2BE5 C; 3I4M B; 2E2J B; 1I3Q B; 3HOV B; 4A3J B; 4A3I B; 3HKZ B; 4A3K B; 2VUM B; 1R9T B; 5C44 B; 3M3Y B; 4BY1 B; 4C2M B; 3GTQ B; 3HOX B; 2CW0 C; 1Y1W B; 4G7Z C; 4BY7 B; 2A6E C; 3FKI B; 4LJZ C; 2NVX B; 4A93 B; 3LTI A; 4LK1 C; 2B63 B; 3S1R B; 3GTM B; 1Y1V B; 4AYB B; 4QIW B; 3DXJ C; 5C4J B; 2JA8 B; 3H3V C; 4A3B B; 2O5J C; 3S1M B; 4BBS B; 3K7A B; 3GTL B; 3GTG B; 4BBR B; 1SMY C; 3GTJ B; 4Y7N B; 2R93 B; 2YU9 B; 4KBM A; 2O5I C; 3S14 B; 5M5Y B; 3RZD B; 3GTO B; 2NVT B; 3S2H B; 4A3F B; 5C3E B; 1I6H B; 1HQM C; 3HOU B; 3CQZ B; 2NVQ B; 3PO3 B; 1TWC B; 2PMZ B; 3EQL C; 2WAQ B; 2R7Z B; 3S16 B; 1TWG B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
