3LTIA

Crystal structure of the escherichia coli rna polymerase beta subunit beta2-betai4 domains
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
293
structure length
274
Chain Sequence
b'MSPGVFFDSDVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGVYVEGRRITARHIRQLEKDDVKLIEVPVEYIAGVVADYIDESTGELICAANMELSLDLLALSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMFNRSLLREEIEGSGILSDDIIDVMLIDIRNGGEVD'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords DNA-directed RNA polymerase subunit beta
publication title Complete structural model of Escherichia coli RNA polymerase from a hybrid approach.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 59
structure length 274
sequence length 293
ec nomenclature ec 2.7.7.6: DNA-directed RNA polymerase.
pdb deposition date 2010-02-16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1110.10 Alpha Beta Alpha-Beta Complex Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 RNA polymerase Rpb2, domain 2 3ltiA01
5C4XB 4BY1B 3GTOB 5M3MB 5M5XB 1I6VC 4C3HB 4Y7NB 1WCMB 1YNJC 2R92B 4G7ZC 3HOYB 2VUMB 1HQMC 1I6HB 3GTJB 1TWHB 2R7ZB 5C3EB 3S2HB 4QIWB 1YNNC 3FKIB 1TWCB 2A6HC 3S1MB 4A3IB 3M4OB 3DXJC 3GTMB 3HOUB 1K83B 3GTGB 2CW0C 2WAQB 5M3FB 2R93B 2Y0SB 4A93B 3HKZB 4C2MB 1SFOB 1I3QB 4GZYC 3HOXB 1TWGB 4A3FB 3HOZB 3S14B 3RZOB 3EQLC 4A3MB 4BBSB 1ZYRC 1Y1VB 2JA7B 2BE5C 5C4JB 3GTPB 4A3DB 4KBMA 2A6EC 2JA6B 3I4MB 3S16B 2NVXB 2NVTB 3S2DB 3LTIA 2NVQB 1Y1WB 2E2IB 4BY7B 4LK1C 3CQZB 3PO2B 3S15B 2A68C 2E2JB 3K7AB 2E2HB 2NVYB 3PO3B 2PPBC 1IW7C 4A3KB 4BBRB 3GTQB 4LJZC 5M5WB 1R9TB 2O5IC 3HOVB 3S1QB 3GTLB 3HOWB 3RZDB 2A69C 4A3EB 2YU9B 1TWAB 4C3JB 3GTKB 4KBJA 1I50B 3S1RB 2JA5B 3H3VC 3I4NB 2B63B 2WB1B 3H0GB 4C3IB 2O5JC 2PMZB 4G7HC 4A3BB 4A3JB 2JA8B 4AYBB 3S17B 5M5YB 1SMYC 1TWFB 3M3YB 4A3GB 4G7OC 3S1NB 5C44B
chains in the Genus database with same CATH superfamily
5C4XB 4BY1B 3GTOB 5M3MB 5M5XB 1I6VC 4C3HB 4Y7NB 1WCMB 1YNJC 2R92B 4G7ZC 3HOYB 2VUMB 1HQMC 1I6HB 3GTJB 1TWHB 2R7ZB 5C3EB 3S2HB 4QIWB 1YNNC 3FKIB 1TWCB 2A6HC 3S1MB 4A3IB 3M4OB 3DXJC 3GTMB 3HOUB 1K83B 3GTGB 2CW0C 2WAQB 5M3FB 2R93B 2Y0SB 4A93B 3HKZB 4C2MB 1SFOB 1I3QB 4GZYC 3HOXB 1TWGB 4A3FB 3HOZB 3S14B 3RZOB 3EQLC 4A3MB 4BBSB 1ZYRC 1Y1VB 2JA7B 2BE5C 5C4JB 3GTPB 4A3DB 4KBMA 2A6EC 2JA6B 3I4MB 3S16B 2NVXB 2NVTB 3S2DB 3LTIA 2NVQB 1Y1WB 2E2IB 4BY7B 4LK1C 3CQZB 3PO2B 3S15B 2A68C 2E2JB 3K7AB 2E2HB 2NVYB 3PO3B 2PPBC 1IW7C 4A3KB 4BBRB 3GTQB 4LJZC 5M5WB 1R9TB 2O5IC 3HOVB 3S1QB 3GTLB 3HOWB 3RZDB 2A69C 4A3EB 2YU9B 1TWAB 4C3JB 3GTKB 4KBJA 1I50B 3S1RB 2JA5B 3H3VC 3I4NB 2B63B 2WB1B 3H0GB 4C3IB 2O5JC 2PMZB 4G7HC 4A3BB 4A3JB 2JA8B 4AYBB 3S17B 5M5YB 1SMYC 1TWFB 3M3YB 4A3GB 4G7OC 3S1NB 5C44B
chains in the Genus database with same CATH topology
5C4XB 4BY1B 3GTOB 5M3MB 5M5XB 1I6VC 4C3HB 4Y7NB 1WCMB 1YNJC 2R92B 4G7ZC 3HOYB 2VUMB 1HQMC 1I6HB 3GTJB 1TWHB 2R7ZB 5C3EB 3S2HB 4QIWB 1YNNC 3FKIB 1TWCB 2A6HC 3S1MB 4A3IB 3M4OB 3DXJC 3GTMB 3HOUB 1K83B 3GTGB 2CW0C 2WAQB 5M3FB 2R93B 2Y0SB 4A93B 3HKZB 4C2MB 1SFOB 1I3QB 4GZYC 3HOXB 1TWGB 4A3FB 3HOZB 3S14B 3RZOB 3EQLC 4A3MB 4BBSB 1ZYRC 1Y1VB 2JA7B 2BE5C 5C4JB 3GTPB 4A3DB 4KBMA 2A6EC 2JA6B 3I4MB 3S16B 2NVXB 2NVTB 3S2DB 3LTIA 2NVQB 1Y1WB 2E2IB 4BY7B 4LK1C 3CQZB 3PO2B 3S15B 2A68C 2E2JB 3K7AB 2E2HB 2NVYB 3PO3B 2PPBC 1IW7C 4A3KB 4BBRB 3GTQB 4LJZC 5M5WB 1R9TB 2O5IC 3HOVB 3S1QB 3GTLB 3HOWB 3RZDB 2A69C 4A3EB 2YU9B 1TWAB 4C3JB 3GTKB 4KBJA 1I50B 3S1RB 2JA5B 3H3VC 3I4NB 2B63B 2WB1B 3H0GB 4C3IB 2O5JC 2PMZB 4G7HC 4A3BB 4A3JB 2JA8B 4AYBB 3S17B 5M5YB 1SMYC 1TWFB 3M3YB 4A3GB 4G7OC 3S1NB 5C44B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5C4X B;  4BY1 B;  3GTO B;  5M3M B;  5M5X B;  1I6V C;  4C3H B;  4Y7N B;  1WCM B;  1YNJ C;  2R92 B;  4G7Z C;  3HOY B;  2VUM B;  1HQM C;  1I6H B;  3GTJ B;  1TWH B;  2R7Z B;  5C3E B;  3S2H B;  4QIW B;  1YNN C;  3FKI B;  1TWC B;  2A6H C;  3S1M B;  4A3I B;  3M4O B;  3DXJ C;  3GTM B;  3HOU B;  1K83 B;  3GTG B;  2CW0 C;  2WAQ B;  5M3F B;  2R93 B;  2Y0S B;  4A93 B;  3HKZ B;  4C2M B;  1SFO B;  1I3Q B;  4GZY C;  3HOX B;  1TWG B;  4A3F B;  3HOZ B;  3S14 B;  3RZO B;  3EQL C;  4A3M B;  4BBS B;  1ZYR C;  1Y1V B;  2JA7 B;  2BE5 C;  5C4J B;  3GTP B;  4A3D B;  4KBM A;  2A6E C;  2JA6 B;  3I4M B;  3S16 B;  2NVX B;  2NVT B;  3S2D B;  3LTI A;  2NVQ B;  1Y1W B;  2E2I B;  4BY7 B;  4LK1 C;  3CQZ B;  3PO2 B;  3S15 B;  2A68 C;  2E2J B;  3K7A B;  2E2H B;  2NVY B;  3PO3 B;  2PPB C;  1IW7 C;  4A3K B;  4BBR B;  3GTQ B;  4LJZ C;  5M5W B;  1R9T B;  2O5I C;  3HOV B;  3S1Q B;  3GTL B;  3HOW B;  3RZD B;  2A69 C;  4A3E B;  2YU9 B;  1TWA B;  4C3J B;  3GTK B;  4KBJ A;  1I50 B;  3S1R B;  2JA5 B;  3H3V C;  3I4N B;  2B63 B;  2WB1 B;  3H0G B;  4C3I B;  2O5J C;  2PMZ B;  4G7H C;  4A3B B;  4A3J B;  2JA8 B;  4AYB B;  3S17 B;  5M5Y B;  1SMY C;  1TWF B;  3M3Y B;  4A3G B;  4G7O C;  3S1N B;  5C44 B; 
#chains in the Genus database with same CATH topology
 5C4X B;  4BY1 B;  3GTO B;  5M3M B;  5M5X B;  1I6V C;  4C3H B;  4Y7N B;  1WCM B;  1YNJ C;  2R92 B;  4G7Z C;  3HOY B;  2VUM B;  1HQM C;  1I6H B;  3GTJ B;  1TWH B;  2R7Z B;  5C3E B;  3S2H B;  4QIW B;  1YNN C;  3FKI B;  1TWC B;  2A6H C;  3S1M B;  4A3I B;  3M4O B;  3DXJ C;  3GTM B;  3HOU B;  1K83 B;  3GTG B;  2CW0 C;  2WAQ B;  5M3F B;  2R93 B;  2Y0S B;  4A93 B;  3HKZ B;  4C2M B;  1SFO B;  1I3Q B;  4GZY C;  3HOX B;  1TWG B;  4A3F B;  3HOZ B;  3S14 B;  3RZO B;  3EQL C;  4A3M B;  4BBS B;  1ZYR C;  1Y1V B;  2JA7 B;  2BE5 C;  5C4J B;  3GTP B;  4A3D B;  4KBM A;  2A6E C;  2JA6 B;  3I4M B;  3S16 B;  2NVX B;  2NVT B;  3S2D B;  3LTI A;  2NVQ B;  1Y1W B;  2E2I B;  4BY7 B;  4LK1 C;  3CQZ B;  3PO2 B;  3S15 B;  2A68 C;  2E2J B;  3K7A B;  2E2H B;  2NVY B;  3PO3 B;  2PPB C;  1IW7 C;  4A3K B;  4BBR B;  3GTQ B;  4LJZ C;  5M5W B;  1R9T B;  2O5I C;  3HOV B;  3S1Q B;  3GTL B;  3HOW B;  3RZD B;  2A69 C;  4A3E B;  2YU9 B;  1TWA B;  4C3J B;  3GTK B;  4KBJ A;  1I50 B;  3S1R B;  2JA5 B;  3H3V C;  3I4N B;  2B63 B;  2WB1 B;  3H0G B;  4C3I B;  2O5J C;  2PMZ B;  4G7H C;  4A3B B;  4A3J B;  2JA8 B;  4AYB B;  3S17 B;  5M5Y B;  1SMY C;  1TWF B;  3M3Y B;  4A3G B;  4G7O C;  3S1N B;  5C44 B; 
#chains in the Genus database with same CATH homology
 5C4X B;  4BY1 B;  3GTO B;  5M3M B;  5M5X B;  1I6V C;  4C3H B;  4Y7N B;  1WCM B;  1YNJ C;  2R92 B;  4G7Z C;  3HOY B;  2VUM B;  1HQM C;  1I6H B;  3GTJ B;  1TWH B;  2R7Z B;  5C3E B;  3S2H B;  4QIW B;  1YNN C;  3FKI B;  1TWC B;  2A6H C;  3S1M B;  4A3I B;  3M4O B;  3DXJ C;  3GTM B;  3HOU B;  1K83 B;  3GTG B;  2CW0 C;  2WAQ B;  5M3F B;  2R93 B;  2Y0S B;  4A93 B;  3HKZ B;  4C2M B;  1SFO B;  1I3Q B;  4GZY C;  3HOX B;  1TWG B;  4A3F B;  3HOZ B;  3S14 B;  3RZO B;  3EQL C;  4A3M B;  4BBS B;  1ZYR C;  1Y1V B;  2JA7 B;  2BE5 C;  5C4J B;  3GTP B;  4A3D B;  4KBM A;  2A6E C;  2JA6 B;  3I4M B;  3S16 B;  2NVX B;  2NVT B;  3S2D B;  3LTI A;  2NVQ B;  1Y1W B;  2E2I B;  4BY7 B;  4LK1 C;  3CQZ B;  3PO2 B;  3S15 B;  2A68 C;  2E2J B;  3K7A B;  2E2H B;  2NVY B;  3PO3 B;  2PPB C;  1IW7 C;  4A3K B;  4BBR B;  3GTQ B;  4LJZ C;  5M5W B;  1R9T B;  2O5I C;  3HOV B;  3S1Q B;  3GTL B;  3HOW B;  3RZD B;  2A69 C;  4A3E B;  2YU9 B;  1TWA B;  4C3J B;  3GTK B;  4KBJ A;  1I50 B;  3S1R B;  2JA5 B;  3H3V C;  3I4N B;  2B63 B;  2WB1 B;  3H0G B;  4C3I B;  2O5J C;  2PMZ B;  4G7H C;  4A3B B;  4A3J B;  2JA8 B;  4AYB B;  3S17 B;  5M5Y B;  1SMY C;  1TWF B;  3M3Y B;  4A3G B;  4G7O C;  3S1N B;  5C44 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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