The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
37
|
sequence length |
210
|
structure length |
210
|
Chain Sequence |
PKTITELEKKVEEIPFKKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGVIISKGEPKEEITKDPINELTEYGPETIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKYGPVKGDSIVEKEEIPFEKERKFNPDLAPGTEKVTREGQKGEKTITTPTLKNPLTGEIISKGESKEEITKDPINELTEYGPET
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structural protein
|
| molecule keywords |
Surface protein G
|
| publication title |
Staphylococcal biofilm-forming protein has a contiguous rod-like structure.
pubmed doi rcsb |
| source organism |
Staphylococcus aureus subsp. aureus nctc 8325
|
| total genus |
37
|
| structure length |
210
|
| sequence length |
210
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2011-08-21 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07501 | G5 | G5 domain |
| A | PF17041 | SasG_E | E domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Single Sheet | Resuscitation-promoting factor rpfb fold | Resuscitation-promoting factor rpfb fold |
#chains in the Genus database with same CATH superfamily 3TIQ A; 4WVE A; #chains in the Genus database with same CATH topology 4FZQ A; 4FUM A; 3EO5 A; 3TIQ A; 4FUN A; 3TIP A; 4FUP A; 2LTJ A; 4WVE A; 4FUO A; 5DBL A; #chains in the Genus database with same CATH homology 3TIQ A; 4WVE A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
