The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
44
|
sequence length |
150
|
structure length |
150
|
Chain Sequence |
AGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal Structure of UbcH5b~Ubiquitin Intermediate: Insight into the Formation of the Self-Assembled E2~Ub Conjugates
pubmed doi rcsb |
| molecule tags |
Ligase
|
| source organism |
Homo sapiens
|
| molecule keywords |
Ubiquitin-conjugating enzyme E2 D2
|
| total genus |
44
|
| structure length |
150
|
| sequence length |
150
|
| ec nomenclature |
ec
2.3.2.23: E2 ubiquitin-conjugating enzyme. |
| pdb deposition date | 2009-06-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00179 | UQ_con | Ubiquitin-conjugating enzyme |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme |
#chains in the Genus database with same CATH superfamily 1J7D B; 2LXP A; 3E46 A; 1X23 A; 2UCZ A; 1YLA A; 2O25 C; 4DS2 A; 2OXQ A; 1M4Q A; 2ESP A; 2ESQ A; 4ZNY A; 5D2M A; 1JBB A; 2XWU A; 4ONN A; 1KPQ A; 2GMI B; 5F6X A; 2R0J A; 5F6V A; 4A4B C; 2Y9M A; 3HCT B; 3A4S A; 4P5O G; 2FUH A; 4JQU A; 3SY2 C; 4A4C C; 1YH2 A; 2EBM A; 3EB6 B; 2Z6P A; 2CLW A; 4Y1L C; 3SQV C; 3UIN A; 1WZV A; 1KPP A; 2BEP A; 2F0R A; 4Q5H C; 2YZ0 A; 5F6Y A; 4ONL A; 4CCG A; 3WE5 A; 4NRG A; 5AIU B; 4YII U; 3O2U A; 4A49 B; 2Q0V A; 4ONM A; 4R62 A; 4S3O A; 4V3K A; 3UIP A; 1Z5S A; 2CLW B; 1Z3D A; 3FN1 B; 4V3L A; 3F92 A; 1ZDN A; 3OBX A; 5D1L A; 2KLY A; 3E95 A; 4IP3 B; 3VON B; 4ONL B; 1W4U A; 4AUQ A; 4DHJ C; 2F4W A; 2GRP A; 2C2V B; 4NRG B; 1Q34 A; 2EBK A; 5FER B; 4ONM B; 1U9A A; 3HCU B; 5AIT D; 2A7L A; 1JAT A; 4GPR A; 2H2Y A; 3R3Q A; 5DFL A; 2DAY A; 2DMF A; 1Z2U A; 1FZY A; 3EVX A; 1ZGU A; 3BZH A; 4DDI A; 5KNL C; 3UGB A; 2AYV A; 3E95 C; 1AYZ A; 3OJ4 A; 1JAS A; 2GRO A; 1J74 A; 4QPL B; 4DDG A; 2GRN A; 5D0M A; 1JAT B; 1Y8X A; 2HLW A; 3ONG B; 5HPT C; 4BVU B; 3R42 A; 1M4P A; 5AIE B; 2Z6O A; 1C4Z D; 1KPS A; 2OB4 A; 2CYX A; 2ONU A; 4DHZ F; 1PZV A; 1FBV C; 4LDT C; 4JUE A; 2PX9 B; 2GJD A; 3K9P A; 3PTF A; 5JNE B; 5AIT B; 3RCZ B; 2QGX A; 3K9O A; 2DAX A; 1A3S A; 5IFR A; 4MDK A; 5F6E A; 3VON C; 4M1N A; 5F6U A; 2C2V C; 2ESK A; 3H8K A; 4BWF A; 4W5V A; 1S1Q A; 3L1Y A; 1YRV A; 2BF8 A; 2O25 A; 4Y1L A; 3L1Z A; 4NR3 B; 3RZ3 A; 4FH1 A; 4DHI D; 1Y6L A; 2FO3 A; 3OBU A; 2AWF A; 5EGG A; 3KPA A; 2KJH A; 2F4Z A; 3UIO A; 2AAK A; 4TKP A; 3FSH A; 2YB6 A; 2DAW A; 4NRI A; 4WZ3 A; 5D1K A; 2GRQ A; 2MT6 A; 2YHO B; 4II2 C; 4NR3 A; 2GRR A; 1TTE A; 4Q5E C; 1U9B A; 2VRR A; 2Z5D A; 4LAD A; 5FQ2 A; 1UKX A; 1QCQ A; 1ZUO A; 5D0K A; 2K07 A; 2UYZ A; 4YC1 A; 2ESO A; 3P9H A; 4NRI B; 2PWQ A; 3W31 B; 4EJE A; 3P9G A; 3RPG A; 3ZQS A; 4AP4 B; 1UZX A; 3OBQ A; 4ONN B; 5F6W A; 3CEG A; 2PE6 A; 1J7D A; 2E2C A; 1WZW A; 3JW0 A; 3TGD A; 2Y9P A; 1I7K A; 3OBS A; 5F6D A; 3ZNI C; 2A4D A; 4L83 A; 3JVZ A; 2GMI A; 2EKE A; 2NVU C; 2Y4W A; 2YBF A; 3A33 A; 4X57 A; 2EDI A; 1YF9 A; 2C4P A; 5D1M A; 1FXT A; #chains in the Genus database with same CATH topology 1J7D B; 2LXP A; 3E46 A; 1X23 A; 2UCZ A; 1YLA A; 2O25 C; 4DS2 A; 2OXQ A; 1M4Q A; 2ESP A; 2ESQ A; 4ZNY A; 5D2M A; 1JBB A; 2XWU A; 4ONN A; 1KPQ A; 2GMI B; 5F6X A; 2R0J A; 5F6V A; 4A4B C; 2Y9M A; 3HCT B; 3A4S A; 4P5O G; 2FUH A; 4JQU A; 3SY2 C; 4A4C C; 1YH2 A; 2EBM A; 3EB6 B; 2Z6P A; 2CLW A; 4Y1L C; 3SQV C; 3UIN A; 1WZV A; 1KPP A; 2BEP A; 2F0R A; 4Q5H C; 2YZ0 A; 5F6Y A; 4ONL A; 4CCG A; 3WE5 A; 4NRG A; 5AIU B; 4YII U; 3O2U A; 4A49 B; 2Q0V A; 4ONM A; 4R62 A; 4S3O A; 4V3K A; 3UIP A; 1Z5S A; 2CLW B; 1Z3D A; 3FN1 B; 4V3L A; 3F92 A; 1ZDN A; 3OBX A; 5D1L A; 2KLY A; 3E95 A; 4IP3 B; 3VON B; 4ONL B; 1W4U A; 4AUQ A; 4DHJ C; 2F4W A; 2GRP A; 2C2V B; 4NRG B; 1Q34 A; 2EBK A; 5FER B; 4ONM B; 1U9A A; 3HCU B; 5AIT D; 2A7L A; 1JAT A; 4GPR A; 2H2Y A; 3R3Q A; 5DFL A; 2DAY A; 2DMF A; 1Z2U A; 1FZY A; 3EVX A; 1ZGU A; 3BZH A; 4DDI A; 5KNL C; 3UGB A; 2AYV A; 3E95 C; 1AYZ A; 3OJ4 A; 1JAS A; 2GRO A; 1J74 A; 4QPL B; 4DDG A; 2GRN A; 5D0M A; 1JAT B; 1Y8X A; 2HLW A; 3ONG B; 5HPT C; 4BVU B; 3R42 A; 1M4P A; 5AIE B; 2Z6O A; 1C4Z D; 1KPS A; 2OB4 A; 2CYX A; 2ONU A; 4DHZ F; 1PZV A; 1FBV C; 4LDT C; 4JUE A; 2PX9 B; 2GJD A; 3K9P A; 3PTF A; 5JNE B; 5AIT B; 3RCZ B; 2QGX A; 3K9O A; 2DAX A; 1A3S A; 5IFR A; 4MDK A; 5F6E A; 3VON C; 4M1N A; 5F6U A; 2C2V C; 2ESK A; 3H8K A; 4BWF A; 4W5V A; 1S1Q A; 3L1Y A; 1YRV A; 2BF8 A; 2O25 A; 4Y1L A; 3L1Z A; 4NR3 B; 3RZ3 A; 4FH1 A; 4DHI D; 1Y6L A; 2FO3 A; 3OBU A; 2AWF A; 5EGG A; 3KPA A; 2KJH A; 2F4Z A; 3UIO A; 2AAK A; 4TKP A; 3FSH A; 2YB6 A; 2DAW A; 4NRI A; 4WZ3 A; 5D1K A; 2GRQ A; 2MT6 A; 2YHO B; 4II2 C; 4NR3 A; 2GRR A; 1TTE A; 4Q5E C; 1U9B A; 2VRR A; 2Z5D A; 4LAD A; 5FQ2 A; 1UKX A; 1QCQ A; 1ZUO A; 5D0K A; 2K07 A; 2UYZ A; 4YC1 A; 2ESO A; 3P9H A; 4NRI B; 2PWQ A; 3W31 B; 4EJE A; 3P9G A; 3RPG A; 3ZQS A; 4AP4 B; 1UZX A; 3OBQ A; 4ONN B; 5F6W A; 3CEG A; 2PE6 A; 1J7D A; 2E2C A; 1WZW A; 3JW0 A; 3TGD A; 2Y9P A; 1I7K A; 3OBS A; 5F6D A; 3ZNI C; 2A4D A; 4L83 A; 3JVZ A; 2GMI A; 2EKE A; 2NVU C; 2Y4W A; 2YBF A; 3A33 A; 4X57 A; 2EDI A; 1YF9 A; 2C4P A; 5D1M A; 1FXT A; #chains in the Genus database with same CATH homology 1J7D B; 2LXP A; 3E46 A; 1X23 A; 2UCZ A; 1YLA A; 2O25 C; 4DS2 A; 2OXQ A; 1M4Q A; 2ESP A; 2ESQ A; 4ZNY A; 5D2M A; 1JBB A; 2XWU A; 4ONN A; 1KPQ A; 2GMI B; 5F6X A; 2R0J A; 5F6V A; 4A4B C; 2Y9M A; 3HCT B; 3A4S A; 4P5O G; 2FUH A; 4JQU A; 3SY2 C; 4A4C C; 1YH2 A; 2EBM A; 3EB6 B; 2Z6P A; 2CLW A; 4Y1L C; 3SQV C; 3UIN A; 1WZV A; 1KPP A; 2BEP A; 2F0R A; 4Q5H C; 2YZ0 A; 5F6Y A; 4ONL A; 4CCG A; 3WE5 A; 4NRG A; 5AIU B; 4YII U; 3O2U A; 4A49 B; 2Q0V A; 4ONM A; 4R62 A; 4S3O A; 4V3K A; 3UIP A; 1Z5S A; 2CLW B; 1Z3D A; 3FN1 B; 4V3L A; 3F92 A; 1ZDN A; 3OBX A; 5D1L A; 2KLY A; 3E95 A; 4IP3 B; 3VON B; 4ONL B; 1W4U A; 4AUQ A; 4DHJ C; 2F4W A; 2GRP A; 2C2V B; 4NRG B; 1Q34 A; 2EBK A; 5FER B; 4ONM B; 1U9A A; 3HCU B; 5AIT D; 2A7L A; 1JAT A; 4GPR A; 2H2Y A; 3R3Q A; 5DFL A; 2DAY A; 2DMF A; 1Z2U A; 1FZY A; 3EVX A; 1ZGU A; 3BZH A; 4DDI A; 5KNL C; 3UGB A; 2AYV A; 3E95 C; 1AYZ A; 3OJ4 A; 1JAS A; 2GRO A; 1J74 A; 4QPL B; 4DDG A; 2GRN A; 5D0M A; 1JAT B; 1Y8X A; 2HLW A; 3ONG B; 5HPT C; 4BVU B; 3R42 A; 1M4P A; 5AIE B; 2Z6O A; 1C4Z D; 1KPS A; 2OB4 A; 2CYX A; 2ONU A; 4DHZ F; 1PZV A; 1FBV C; 4LDT C; 4JUE A; 2PX9 B; 2GJD A; 3K9P A; 3PTF A; 5JNE B; 5AIT B; 3RCZ B; 2QGX A; 3K9O A; 2DAX A; 1A3S A; 5IFR A; 4MDK A; 5F6E A; 3VON C; 4M1N A; 5F6U A; 2C2V C; 2ESK A; 3H8K A; 4BWF A; 4W5V A; 1S1Q A; 3L1Y A; 1YRV A; 2BF8 A; 2O25 A; 4Y1L A; 3L1Z A; 4NR3 B; 3RZ3 A; 4FH1 A; 4DHI D; 1Y6L A; 2FO3 A; 3OBU A; 2AWF A; 5EGG A; 3KPA A; 2KJH A; 2F4Z A; 3UIO A; 2AAK A; 4TKP A; 3FSH A; 2YB6 A; 2DAW A; 4NRI A; 4WZ3 A; 5D1K A; 2GRQ A; 2MT6 A; 2YHO B; 4II2 C; 4NR3 A; 2GRR A; 1TTE A; 4Q5E C; 1U9B A; 2VRR A; 2Z5D A; 4LAD A; 5FQ2 A; 1UKX A; 1QCQ A; 1ZUO A; 5D0K A; 2K07 A; 2UYZ A; 4YC1 A; 2ESO A; 3P9H A; 4NRI B; 2PWQ A; 3W31 B; 4EJE A; 3P9G A; 3RPG A; 3ZQS A; 4AP4 B; 1UZX A; 3OBQ A; 4ONN B; 5F6W A; 3CEG A; 2PE6 A; 1J7D A; 2E2C A; 1WZW A; 3JW0 A; 3TGD A; 2Y9P A; 1I7K A; 3OBS A; 5F6D A; 3ZNI C; 2A4D A; 4L83 A; 3JVZ A; 2GMI A; 2EKE A; 2NVU C; 2Y4W A; 2YBF A; 3A33 A; 4X57 A; 2EDI A; 1YF9 A; 2C4P A; 5D1M A; 1FXT A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
