3V8FA

Crystal structure of crosslinked gltph v216c-m385c mutant
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
Knots found
sequence length
410
structure length
410
Chain Sequence
YIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYCMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYACILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords sodium-coupled L-aspartate transporter
publication title Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 134
structure length 410
sequence length 410
chains with identical sequence B, C
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2011-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporter 3v8fA00
4OYEA 1XFHA 2NWXA 5DWYA 3KBCA 4KY0A 4P3JA 5E9SA 3V8FA 2NWLA 4P1AA 4P19A 5CFYA 2NWWA 4OYFA
chains in the Genus database with same CATH superfamily
4OYEA 1XFHA 2NWXA 5DWYA 3KBCA 4KY0A 4P3JA 5E9SA 3V8FA 2NWLA 4P1AA 4P19A 5CFYA 2NWWA 4OYFA
chains in the Genus database with same CATH topology
4OYEA 1XFHA 2NWXA 5DWYA 3KBCA 4KY0A 4P3JA 5E9SA 3V8FA 2NWLA 4P1AA 4P19A 5CFYA 2NWWA 4OYFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OYE A;  1XFH A;  2NWX A;  5DWY A;  3KBC A;  4KY0 A;  4P3J A;  5E9S A;  3V8F A;  2NWL A;  4P1A A;  4P19 A;  5CFY A;  2NWW A;  4OYF A; 
#chains in the Genus database with same CATH topology
 4OYE A;  1XFH A;  2NWX A;  5DWY A;  3KBC A;  4KY0 A;  4P3J A;  5E9S A;  3V8F A;  2NWL A;  4P1A A;  4P19 A;  5CFY A;  2NWW A;  4OYF A; 
#chains in the Genus database with same CATH homology
 4OYE A;  1XFH A;  2NWX A;  5DWY A;  3KBC A;  4KY0 A;  4P3J A;  5E9S A;  3V8F A;  2NWL A;  4P1A A;  4P19 A;  5CFY A;  2NWW A;  4OYF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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