3V8FA

Crystal structure of crosslinked gltph v216c-m385c mutant
Total Genus 134
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
134
Knots found
sequence length
410
structure length
410
Chain Sequence
YIEYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPHQAPPLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYCMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVATFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYACILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an asymmetric trimer of a bacterial glutamate transporter homolog.
pubmed doi rcsb
source organism Pyrococcus horikoshii
molecule tags Transport protein
molecule keywords sodium-coupled L-aspartate transporter
total genus 134
structure length 410
sequence length 410
chains with identical sequence B, C
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2011-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporter 3v8fA00
3KBCA 4OYFA 5E9SA 4KY0A 2NWWA 3V8FA 4P19A 1XFHA 4P1AA 2NWLA 5CFYA 4OYEA 5DWYA 2NWXA 4P3JA
chains in the Genus database with same CATH superfamily
3KBCA 4OYFA 5E9SA 4KY0A 2NWWA 3V8FA 4P19A 1XFHA 4P1AA 2NWLA 5CFYA 4OYEA 5DWYA 2NWXA 4P3JA
chains in the Genus database with same CATH topology
3KBCA 4OYFA 5E9SA 4KY0A 2NWWA 3V8FA 4P19A 1XFHA 4P1AA 2NWLA 5CFYA 4OYEA 5DWYA 2NWXA 4P3JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KBC A;  4OYF A;  5E9S A;  4KY0 A;  2NWW A;  3V8F A;  4P19 A;  1XFH A;  4P1A A;  2NWL A;  5CFY A;  4OYE A;  5DWY A;  2NWX A;  4P3J A; 
#chains in the Genus database with same CATH topology
 3KBC A;  4OYF A;  5E9S A;  4KY0 A;  2NWW A;  3V8F A;  4P19 A;  1XFH A;  4P1A A;  2NWL A;  5CFY A;  4OYE A;  5DWY A;  2NWX A;  4P3J A; 
#chains in the Genus database with same CATH homology
 3KBC A;  4OYF A;  5E9S A;  4KY0 A;  2NWW A;  3V8F A;  4P19 A;  1XFH A;  4P1A A;  2NWL A;  5CFY A;  4OYE A;  5DWY A;  2NWX A;  4P3J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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