The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
21
|
sequence length |
85
|
structure length |
85
|
Chain Sequence |
VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface.
pubmed doi rcsb |
| molecule keywords |
Transcription-repair-coupling factor
|
| molecule tags |
Hydrolase/dna binding protein
|
| source organism |
Escherichia coli
|
| total genus |
21
|
| structure length |
85
|
| sequence length |
85
|
| chains with identical sequence |
C
|
| ec nomenclature |
ec
3.6.4.-: |
| pdb deposition date | 2012-01-23 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Penicillin-binding protein 1b fold | Penicillin-binding protein 1b domain |
#chains in the Genus database with same CATH superfamily 2D7D A; 3FWL A; 3HJH A; 1D9X A; 3FPN B; 2NMV A; 3V4R A; 2B2N A; 1D9Z A; 3VMA A; 2EYQ A; 4DFC A; 1T5L A; #chains in the Genus database with same CATH topology 2D7D A; 3FWL A; 3HJH A; 1D9X A; 3FPN B; 2NMV A; 3V4R A; 2B2N A; 1D9Z A; 3VMA A; 2EYQ A; 4DFC A; 1T5L A; #chains in the Genus database with same CATH homology 2D7D A; 3FWL A; 3HJH A; 1D9X A; 3FPN B; 2NMV A; 3V4R A; 2B2N A; 1D9Z A; 3VMA A; 2EYQ A; 4DFC A; 1T5L A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
