4U9BA

Crystal structure of an h-nox protein from s. oneidensis in the fe(ii)no ligation state
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
180
structure length
180
Chain Sequence
MKGIIFNVLEDMVVAQCGMSVWNELLEKHAPKDRVYVSAKSYAESELFSIVQDVAQRLNMPIQDVVKAFGQFLFNGLASRHTDVVDKFDDFTSLVMGIHDVIHLEVNKLYHEPSLPHINGQLLPNNQIALRYSSPRRLCFCAEGLLFGAAQHFQQKIQISHDTCMHTGADHCMLIIELQN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the role of iron-histidine bond cleavage in nitric oxide-induced activation of H-NOX gas sensor proteins.
pubmed doi rcsb
molecule tags Signaling protein
source organism Shewanella oneidensis
molecule keywords NO-binding heme-dependent sensor protein
total genus 56
structure length 180
sequence length 180
ec nomenclature
pdb deposition date 2014-08-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07700 HNOB Haem-NO-binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1520.10 Alpha Beta Alpha-Beta Complex H-NOX domain H-NOX domain 4u9bA00
4FDKA 2O0CA 4JQHA 2O09A 4IT2A 3SJ5A 1U55A 3IQBA 3TF0A 4IAHA 5JRVA 3LAHA 3L6JA 3NVRA 3TFEA 4U99A 5JRXA 3EEEA 4U9BA 4U9KA 3TFAA 3TFFA 1U4HA 3LAIA 2KIIA 4IAMA 3TF9A 3TF8A 1XBNA 5JRUA 2O0GA 2KILA 4U9GA 3M0BA 4U9JA 3TFDA 3TFGA 3NVUA 3TF1A 4IAEA 1U56A
chains in the Genus database with same CATH superfamily
4FDKA 2O0CA 4JQHA 2O09A 4IT2A 3SJ5A 1U55A 3IQBA 3TF0A 4IAHA 5JRVA 3LAHA 3L6JA 3NVRA 3TFEA 4U99A 5JRXA 3EEEA 4U9BA 4U9KA 3TFAA 3TFFA 1U4HA 3LAIA 2KIIA 4IAMA 3TF9A 3TF8A 1XBNA 5JRUA 2O0GA 2KILA 4U9GA 3M0BA 4U9JA 3TFDA 3TFGA 3NVUA 3TF1A 4IAEA 1U56A
chains in the Genus database with same CATH topology
4FDKA 2O0CA 4JQHA 2O09A 4IT2A 3SJ5A 1U55A 3IQBA 3TF0A 4IAHA 5JRVA 3LAHA 3L6JA 3NVRA 3TFEA 4U99A 5JRXA 3EEEA 4U9BA 4U9KA 3TFAA 3TFFA 1U4HA 3LAIA 2KIIA 4IAMA 3TF9A 3TF8A 1XBNA 5JRUA 2O0GA 2KILA 4U9GA 3M0BA 4U9JA 3TFDA 3TFGA 3NVUA 3TF1A 4IAEA 1U56A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FDK A;  2O0C A;  4JQH A;  2O09 A;  4IT2 A;  3SJ5 A;  1U55 A;  3IQB A;  3TF0 A;  4IAH A;  5JRV A;  3LAH A;  3L6J A;  3NVR A;  3TFE A;  4U99 A;  5JRX A;  3EEE A;  4U9B A;  4U9K A;  3TFA A;  3TFF A;  1U4H A;  3LAI A;  2KII A;  4IAM A;  3TF9 A;  3TF8 A;  1XBN A;  5JRU A;  2O0G A;  2KIL A;  4U9G A;  3M0B A;  4U9J A;  3TFD A;  3TFG A;  3NVU A;  3TF1 A;  4IAE A;  1U56 A; 
#chains in the Genus database with same CATH topology
 4FDK A;  2O0C A;  4JQH A;  2O09 A;  4IT2 A;  3SJ5 A;  1U55 A;  3IQB A;  3TF0 A;  4IAH A;  5JRV A;  3LAH A;  3L6J A;  3NVR A;  3TFE A;  4U99 A;  5JRX A;  3EEE A;  4U9B A;  4U9K A;  3TFA A;  3TFF A;  1U4H A;  3LAI A;  2KII A;  4IAM A;  3TF9 A;  3TF8 A;  1XBN A;  5JRU A;  2O0G A;  2KIL A;  4U9G A;  3M0B A;  4U9J A;  3TFD A;  3TFG A;  3NVU A;  3TF1 A;  4IAE A;  1U56 A; 
#chains in the Genus database with same CATH homology
 4FDK A;  2O0C A;  4JQH A;  2O09 A;  4IT2 A;  3SJ5 A;  1U55 A;  3IQB A;  3TF0 A;  4IAH A;  5JRV A;  3LAH A;  3L6J A;  3NVR A;  3TFE A;  4U99 A;  5JRX A;  3EEE A;  4U9B A;  4U9K A;  3TFA A;  3TFF A;  1U4H A;  3LAI A;  2KII A;  4IAM A;  3TF9 A;  3TF8 A;  1XBN A;  5JRU A;  2O0G A;  2KIL A;  4U9G A;  3M0B A;  4U9J A;  3TFD A;  3TFG A;  3NVU A;  3TF1 A;  4IAE A;  1U56 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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