The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
113
|
sequence length |
437
|
structure length |
437
|
Chain Sequence |
EKVGKFSPEVHPPITWQECADDGSCKTMNGEIVIDANWRWVHSEQGTNCYTGNTWNPTLCPDDKTCAENCYLDGANYESVYGITTEDDSVRLNFITQSQGKNIGSRTFLMANSTNYQMFYVLGQEFSFDVDVSNLDCGLNGALYLVSMDSDGGIARFPSNEAGAQYGTGYCDAQCPRDLKFISGSANVEGWIPSSNNPNTGYGNHGSCCAEMDLWEANNMATALTPHPCDTSSQTVCESDSCGGATSSNRYGGLCDPDGCDYNPYRMGNTTFFGPGQTVDTKSVMTVVTQFITNDGTTTGTLKSIKRLYVQNGQVISQSESTVPGVAGNEITEDFCHNQKQVFGDKDSFTKHGGLAAMGDALKNGMVLVLSLWDDYLADMLWLDSNYPTTSPVTEPGVARGPCSTSSGTPTDVESKYPNAYVVYSNIKVGPINSTFK
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Hydrolase
|
| molecule keywords |
CELLULOSE 1,4-BETA-CELLOBIOSIDASE
|
| publication title |
Biochemical and Structural Characterization of Two Dictyostelium Cellobiohydrolases from the Amoebozoa Kingdom Reveal a High Conservation between Distant Phylogenetic Trees of Life.
pubmed doi rcsb |
| source organism |
Dictyostelium purpureum
|
| total genus |
113
|
| structure length |
437
|
| sequence length |
437
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
3.2.1.176: Cellulose 1,4-beta-cellobiosidase (reducing end). |
| pdb deposition date | 2015-04-13 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00840 | Glyco_hydro_7 | Glycosyl hydrolase family 7 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A | Glycoside hydrolase, family 7, domain |
#chains in the Genus database with same CATH superfamily 5CEL A; 2RFZ A; 4D5J A; 4D5P A; 1GPI A; 1OJJ A; 1Q9H A; 4C4C A; 4D5O A; 5AMP A; 1A39 A; 1Q2B A; 4XNN A; 3PFJ A; 4HAQ A; 2YG1 A; 2A39 A; 2V3R A; 4V20 A; 3PL3 A; 1OJI A; 4V1Z A; 4C4D A; 1CEL A; 2Y9N A; 2OVW A; 1Q2E A; 3OVW A; 2RG0 A; 4CEL A; 4HAP A; 1DYM A; 2V3I A; 4XEB A; 4D5V A; 6CEL A; 2RFW A; 1OVW A; 4OVW A; 7CEL A; 4ZZP A; 4CSI A; 2RFY A; 2YOK A; 4P1J A; 4GWA A; 4ZZQ A; 4ZZV A; 4UWT A; 4ZZT A; 4V0Z A; 1OJK A; 4IPM A; 4P1H A; 2XSP A; 4D5Q A; 1EGN A; 1Z3V A; 1DY4 A; 2CEL A; 4D5I A; 4ZZW A; 3PFX A; 1EG1 A; 4ZZU A; 1H46 X; 3PFZ A; 1Z3T A; 1Z3W A; 3CEL A; #chains in the Genus database with same CATH topology 5CEL A; 2RFZ A; 4D5J A; 4D5P A; 1GPI A; 1OJJ A; 1Q9H A; 4C4C A; 4D5O A; 5AMP A; 1A39 A; 1Q2B A; 4XNN A; 3PFJ A; 4HAQ A; 2YG1 A; 2A39 A; 2V3R A; 4V20 A; 3PL3 A; 1OJI A; 4V1Z A; 4C4D A; 1CEL A; 2Y9N A; 2OVW A; 1Q2E A; 3OVW A; 2RG0 A; 4CEL A; 4HAP A; 1DYM A; 2V3I A; 4XEB A; 4D5V A; 6CEL A; 2RFW A; 1OVW A; 4OVW A; 7CEL A; 4ZZP A; 4CSI A; 2RFY A; 2YOK A; 4P1J A; 4GWA A; 4ZZQ A; 4ZZV A; 4UWT A; 4ZZT A; 4V0Z A; 1OJK A; 4IPM A; 4P1H A; 2XSP A; 4D5Q A; 1EGN A; 1Z3V A; 1DY4 A; 2CEL A; 4D5I A; 4ZZW A; 3PFX A; 1EG1 A; 4ZZU A; 1H46 X; 3PFZ A; 1Z3T A; 1Z3W A; 3CEL A; #chains in the Genus database with same CATH homology 5CEL A; 2RFZ A; 4D5J A; 4D5P A; 1GPI A; 1OJJ A; 1Q9H A; 4C4C A; 4D5O A; 5AMP A; 1A39 A; 1Q2B A; 4XNN A; 3PFJ A; 4HAQ A; 2YG1 A; 2A39 A; 2V3R A; 4V20 A; 3PL3 A; 1OJI A; 4V1Z A; 4C4D A; 1CEL A; 2Y9N A; 2OVW A; 1Q2E A; 3OVW A; 2RG0 A; 4CEL A; 4HAP A; 1DYM A; 2V3I A; 4XEB A; 4D5V A; 6CEL A; 2RFW A; 1OVW A; 4OVW A; 7CEL A; 4ZZP A; 4CSI A; 2RFY A; 2YOK A; 4P1J A; 4GWA A; 4ZZQ A; 4ZZV A; 4UWT A; 4ZZT A; 4V0Z A; 1OJK A; 4IPM A; 4P1H A; 2XSP A; 4D5Q A; 1EGN A; 1Z3V A; 1DY4 A; 2CEL A; 4D5I A; 4ZZW A; 3PFX A; 1EG1 A; 4ZZU A; 1H46 X; 3PFZ A; 1Z3T A; 1Z3W A; 3CEL A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
