4KY0A

Crystal structure of a substrate-free glutamate transporter homologue from thermococcus kodakarensis
Total Genus 156
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
156
Knots found
sequence length
422
structure length
416
Chain Sequence
YLDYPVLWKILWGLVLGAVFGLIAGHFGYAGAVKTYIKPFGDLFVRLLKMLVMPIVLASLVVGAASISPARLGRVGVKIVVYYLATSAMAVFFGLIVGRLFNVGANVNLGSGTGKAILVQTLLNIVPTNPFASLAKGEVLPVIFFAIILGIAITYLMNRNEERVRKSAETLLRVFDGLAEAMYLIVGGVMQYAPIGVFALIAYVMAEQGVRVVGPLAKVVGAVYTGLFLQIVITYFILLKVFGIDPIKFIRKAKDAMITAFVTRSSSGTLPVTMRVAEEEMGVDKGIFSFTLPLGATINMDGTALYQGVTVLFVANAIGHPLTLGQQLVVVLTAVLASIGTAGVPGAGAIMLAMVLQSVGLDLTPGSPVALAYAMILGIDAILDMGRTMVNVTGDLAGTVIVAKTEKELDESKWIS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein, membrane protein
molecule keywords Proton/glutamate symporter, SDF family
publication title Crystal structure of a substrate-free aspartate transporter.
pubmed doi rcsb
source organism Thermococcus kodakarensis
total genus 156
structure length 416
sequence length 422
chains with identical sequence B, C
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2013-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporter 4ky0A00
5DWYA 3V8FA 4P19A 1XFHA 4KY0A 4P3JA 5CFYA 3KBCA 4OYEA 2NWWA 2NWLA 4P1AA 2NWXA 4OYFA 5E9SA
chains in the Genus database with same CATH superfamily
5DWYA 3V8FA 4P19A 1XFHA 4KY0A 4P3JA 5CFYA 3KBCA 4OYEA 2NWWA 2NWLA 4P1AA 2NWXA 4OYFA 5E9SA
chains in the Genus database with same CATH topology
5DWYA 3V8FA 4P19A 1XFHA 4KY0A 4P3JA 5CFYA 3KBCA 4OYEA 2NWWA 2NWLA 4P1AA 2NWXA 4OYFA 5E9SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DWY A;  3V8F A;  4P19 A;  1XFH A;  4KY0 A;  4P3J A;  5CFY A;  3KBC A;  4OYE A;  2NWW A;  2NWL A;  4P1A A;  2NWX A;  4OYF A;  5E9S A; 
#chains in the Genus database with same CATH topology
 5DWY A;  3V8F A;  4P19 A;  1XFH A;  4KY0 A;  4P3J A;  5CFY A;  3KBC A;  4OYE A;  2NWW A;  2NWL A;  4P1A A;  2NWX A;  4OYF A;  5E9S A; 
#chains in the Genus database with same CATH homology
 5DWY A;  3V8F A;  4P19 A;  1XFH A;  4KY0 A;  4P3J A;  5CFY A;  3KBC A;  4OYE A;  2NWW A;  2NWL A;  4P1A A;  2NWX A;  4OYF A;  5E9S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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