4OYFA

Crystal structure of gltph r397a in sodium-bound state
Total Genus 150
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
150
Knots found
sequence length
408
structure length
399
Chain Sequence
EYPVLQKILIGLILGAIVGLILGHYGYAHAVHTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQLVHILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLASIGTAGVPGAGAIMLAMVLHSVGLPLTDPNVAAAYAMILGIDAILDMGRTMVNVTGDLTGTAIVAKTE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords GLUTAMATE SYMPORT PROTEIN
publication title Coupled ion binding and structural transitions along the transport cycle of glutamate transporters.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 150
structure length 399
sequence length 408
chains with identical sequence B, C, D, E, F
other databases KnotProt 2.0: S +31
ec nomenclature
pdb deposition date 2014-02-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00375 SDF Sodium:dicarboxylate symporter family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.3860.10 Mainly Alpha Orthogonal Bundle Proton glutamate symport protein Sodium:dicarboxylate symporter 4oyfA00
4OYFA 5E9SA 4KY0A 4OYEA 4P19A 3V8FA 2NWXA 4P1AA 2NWWA 5CFYA 2NWLA 3KBCA 5DWYA 1XFHA 4P3JA
chains in the Genus database with same CATH superfamily
4OYFA 5E9SA 4KY0A 4OYEA 4P19A 3V8FA 2NWXA 4P1AA 2NWWA 5CFYA 2NWLA 3KBCA 5DWYA 1XFHA 4P3JA
chains in the Genus database with same CATH topology
4OYFA 5E9SA 4KY0A 4OYEA 4P19A 3V8FA 2NWXA 4P1AA 2NWWA 5CFYA 2NWLA 3KBCA 5DWYA 1XFHA 4P3JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4OYF A;  5E9S A;  4KY0 A;  4OYE A;  4P19 A;  3V8F A;  2NWX A;  4P1A A;  2NWW A;  5CFY A;  2NWL A;  3KBC A;  5DWY A;  1XFH A;  4P3J A; 
#chains in the Genus database with same CATH topology
 4OYF A;  5E9S A;  4KY0 A;  4OYE A;  4P19 A;  3V8F A;  2NWX A;  4P1A A;  2NWW A;  5CFY A;  2NWL A;  3KBC A;  5DWY A;  1XFH A;  4P3J A; 
#chains in the Genus database with same CATH homology
 4OYF A;  5E9S A;  4KY0 A;  4OYE A;  4P19 A;  3V8F A;  2NWX A;  4P1A A;  2NWW A;  5CFY A;  2NWL A;  3KBC A;  5DWY A;  1XFH A;  4P3J A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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