4V1ZA

The 3-d structure of the cellobiohydrolase, cel7a, from aspergillus fumigatus
Total Genus 127
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
127
sequence length
440
structure length
440
Chain Sequence
EQVGTSQAEVHPSMTWQSCTAGGSCTTNNGKVVIDANWRWVHKVGDYTNCYTGNTWDTTICPDDATCASNCALEGANYESTYGVTASGNSLRLNFVTTSQQKNIGSRLYMMKDDSTYEMFKLLNQEFTFDVDVSNLPCGLNGALYFVAMDADGGMSKYPTNKAGAKYGTGYCDSQCPRDLKFINGQANVEGWQPSSNDANAGTGNHGSCCAEMDIWEANSISTAFTPHPCDTPGQVMCTGDACGGTYSSDRYGGTCDPDGCDFNSFRQGNKTFYGPGMTVDTKSKFTVVTQFITDDGTSSGTLKEIKRFYVQNGKVIPNSESTWTGVSGNSITTEYCTAQKSLFQDQNVFEKHGGLEGMGAALAQGMVLVMSLWDDHSANMLWLDSNYPTTASSTTPGVARGTCDISSGVPADVEANHPDAYVVYSNIKVGPIGSTFNSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Hydrolase
molecule keywords CELLOBIOHYDROLASE
publication title The Three-Dimensional Structure of the Cellobiohydrolase Cel7A from Aspergillus Fumigatus at 1.5 A Resolution
pubmed doi rcsb
source organism Aspergillus fumigatus
total genus 127
structure length 440
sequence length 440
ec nomenclature ec 3.2.1.91: Cellulose 1,4-beta-cellobiosidase (non-reducing end).
pdb deposition date 2014-10-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00840 Glyco_hydro_7 Glycosyl hydrolase family 7
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.100.10 Mainly Beta Distorted Sandwich 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A Glycoside hydrolase, family 7, domain 4v1zA00
4HAQA 4P1JA 1OJKA 1OJIA 4IPMA 4P1HA 2RFWA 4ZZWA 4CELA 1H46X 5AMPA 4D5QA 1DY4A 1GPIA 4OVWA 1Q2EA 4ZZTA 2V3IA 1DYMA 4HAPA 1CELA 4V1ZA 1Q2BA 2OVWA 2RFZA 3OVWA 1OVWA 3PFZA 4ZZPA 7CELA 1A39A 2YOKA 6CELA 1Z3VA 4XNNA 4D5IA 1Z3TA 3PFJA 4V20A 2V3RA 4V0ZA 1EGNA 3PFXA 4XEBA 4ZZVA 3CELA 1Z3WA 2RFYA 2CELA 4D5OA 4D5VA 1Q9HA 4D5JA 4GWAA 2RG0A 4UWTA 4C4DA 4ZZUA 2A39A 2Y9NA 1OJJA 2YG1A 4C4CA 4D5PA 4ZZQA 5CELA 4CSIA 3PL3A 2XSPA 1EG1A
chains in the Genus database with same CATH superfamily
4HAQA 4P1JA 1OJKA 1OJIA 4IPMA 4P1HA 2RFWA 4ZZWA 4CELA 1H46X 5AMPA 4D5QA 1DY4A 1GPIA 4OVWA 1Q2EA 4ZZTA 2V3IA 1DYMA 4HAPA 1CELA 4V1ZA 1Q2BA 2OVWA 2RFZA 3OVWA 1OVWA 3PFZA 4ZZPA 7CELA 1A39A 2YOKA 6CELA 1Z3VA 4XNNA 4D5IA 1Z3TA 3PFJA 4V20A 2V3RA 4V0ZA 1EGNA 3PFXA 4XEBA 4ZZVA 3CELA 1Z3WA 2RFYA 2CELA 4D5OA 4D5VA 1Q9HA 4D5JA 4GWAA 2RG0A 4UWTA 4C4DA 4ZZUA 2A39A 2Y9NA 1OJJA 2YG1A 4C4CA 4D5PA 4ZZQA 5CELA 4CSIA 3PL3A 2XSPA 1EG1A
chains in the Genus database with same CATH topology
4HAQA 4P1JA 1OJKA 1OJIA 4IPMA 4P1HA 2RFWA 4ZZWA 4CELA 1H46X 5AMPA 4D5QA 1DY4A 1GPIA 4OVWA 1Q2EA 4ZZTA 2V3IA 1DYMA 4HAPA 1CELA 4V1ZA 1Q2BA 2OVWA 2RFZA 3OVWA 1OVWA 3PFZA 4ZZPA 7CELA 1A39A 2YOKA 6CELA 1Z3VA 4XNNA 4D5IA 1Z3TA 3PFJA 4V20A 2V3RA 4V0ZA 1EGNA 3PFXA 4XEBA 4ZZVA 3CELA 1Z3WA 2RFYA 2CELA 4D5OA 4D5VA 1Q9HA 4D5JA 4GWAA 2RG0A 4UWTA 4C4DA 4ZZUA 2A39A 2Y9NA 1OJJA 2YG1A 4C4CA 4D5PA 4ZZQA 5CELA 4CSIA 3PL3A 2XSPA 1EG1A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4HAQ A;  4P1J A;  1OJK A;  1OJI A;  4IPM A;  4P1H A;  2RFW A;  4ZZW A;  4CEL A;  1H46 X;  5AMP A;  4D5Q A;  1DY4 A;  1GPI A;  4OVW A;  1Q2E A;  4ZZT A;  2V3I A;  1DYM A;  4HAP A;  1CEL A;  4V1Z A;  1Q2B A;  2OVW A;  2RFZ A;  3OVW A;  1OVW A;  3PFZ A;  4ZZP A;  7CEL A;  1A39 A;  2YOK A;  6CEL A;  1Z3V A;  4XNN A;  4D5I A;  1Z3T A;  3PFJ A;  4V20 A;  2V3R A;  4V0Z A;  1EGN A;  3PFX A;  4XEB A;  4ZZV A;  3CEL A;  1Z3W A;  2RFY A;  2CEL A;  4D5O A;  4D5V A;  1Q9H A;  4D5J A;  4GWA A;  2RG0 A;  4UWT A;  4C4D A;  4ZZU A;  2A39 A;  2Y9N A;  1OJJ A;  2YG1 A;  4C4C A;  4D5P A;  4ZZQ A;  5CEL A;  4CSI A;  3PL3 A;  2XSP A;  1EG1 A; 
#chains in the Genus database with same CATH topology
 4HAQ A;  4P1J A;  1OJK A;  1OJI A;  4IPM A;  4P1H A;  2RFW A;  4ZZW A;  4CEL A;  1H46 X;  5AMP A;  4D5Q A;  1DY4 A;  1GPI A;  4OVW A;  1Q2E A;  4ZZT A;  2V3I A;  1DYM A;  4HAP A;  1CEL A;  4V1Z A;  1Q2B A;  2OVW A;  2RFZ A;  3OVW A;  1OVW A;  3PFZ A;  4ZZP A;  7CEL A;  1A39 A;  2YOK A;  6CEL A;  1Z3V A;  4XNN A;  4D5I A;  1Z3T A;  3PFJ A;  4V20 A;  2V3R A;  4V0Z A;  1EGN A;  3PFX A;  4XEB A;  4ZZV A;  3CEL A;  1Z3W A;  2RFY A;  2CEL A;  4D5O A;  4D5V A;  1Q9H A;  4D5J A;  4GWA A;  2RG0 A;  4UWT A;  4C4D A;  4ZZU A;  2A39 A;  2Y9N A;  1OJJ A;  2YG1 A;  4C4C A;  4D5P A;  4ZZQ A;  5CEL A;  4CSI A;  3PL3 A;  2XSP A;  1EG1 A; 
#chains in the Genus database with same CATH homology
 4HAQ A;  4P1J A;  1OJK A;  1OJI A;  4IPM A;  4P1H A;  2RFW A;  4ZZW A;  4CEL A;  1H46 X;  5AMP A;  4D5Q A;  1DY4 A;  1GPI A;  4OVW A;  1Q2E A;  4ZZT A;  2V3I A;  1DYM A;  4HAP A;  1CEL A;  4V1Z A;  1Q2B A;  2OVW A;  2RFZ A;  3OVW A;  1OVW A;  3PFZ A;  4ZZP A;  7CEL A;  1A39 A;  2YOK A;  6CEL A;  1Z3V A;  4XNN A;  4D5I A;  1Z3T A;  3PFJ A;  4V20 A;  2V3R A;  4V0Z A;  1EGN A;  3PFX A;  4XEB A;  4ZZV A;  3CEL A;  1Z3W A;  2RFY A;  2CEL A;  4D5O A;  4D5V A;  1Q9H A;  4D5J A;  4GWA A;  2RG0 A;  4UWT A;  4C4D A;  4ZZU A;  2A39 A;  2Y9N A;  1OJJ A;  2YG1 A;  4C4C A;  4D5P A;  4ZZQ A;  5CEL A;  4CSI A;  3PL3 A;  2XSP A;  1EG1 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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