The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
36
|
sequence length |
140
|
structure length |
140
|
Chain Sequence |
GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Ligase/signaling protein
|
| molecule keywords |
E3 UBIQUITIN-PROTEIN LIGASE RNF4
|
| publication title |
Structural Basis for the Ring Catalyzed Synthesis of K63 Linked Ubiquitin Chains
pubmed doi rcsb |
| source organism |
Rattus norvegicus
|
| total genus |
36
|
| structure length |
140
|
| sequence length |
140
|
| chains with identical sequence |
G
|
| ec nomenclature | |
| pdb deposition date | 2015-02-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| D | PF00179 | UQ_con | Ubiquitin-conjugating enzyme |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme |
#chains in the Genus database with same CATH superfamily 4EJE A; 2R0J A; 1WZV A; 4NRG B; 3VON C; 3RZ3 A; 2FO3 A; 4Q5E C; 1UZX A; 4MDK A; 1C4Z D; 2CYX A; 3H8K A; 2Q0V A; 2OB4 A; 4AUQ A; 2Y9P A; 2GJD A; 1A3S A; 3UGB A; 1FBV C; 5F6W A; 2CLW A; 4WZ3 A; 3UIP A; 4YC1 A; 2ESP A; 2A4D A; 5D1M A; 1Z5S A; 2EKE A; 5F6D A; 2AAK A; 3UIN A; 4ONN A; 2PX9 B; 3A33 A; 3R42 A; 4LAD A; 5F6V A; 3ZNI C; 2EBK A; 4NR3 A; 2EDI A; 2EBM A; 3OBU A; 5KNL C; 2C4P A; 3EVX A; 2NVU C; 3HCU B; 3CEG A; 2C2V C; 4AP4 B; 2ESO A; 4A49 B; 4DDG A; 4BWF A; 5AIE B; 1U9A A; 3E95 A; 1Z3D A; 1M4Q A; 3F92 A; 2O25 A; 2ESK A; 2GRN A; 3E95 C; 2GMI B; 3EB6 B; 2AYV A; 2Y9M A; 4S3O A; 5F6X A; 3RCZ B; 5FER B; 4ONM B; 4ZNY A; 3FSH A; 1X23 A; 2QGX A; 2Z6P A; 3OBQ A; 4LDT C; 4NRI B; 5FQ2 A; 2A7L A; 1JAT A; 1AYZ A; 4A4C C; 2Y4W A; 2F4W A; 4DHJ C; 1Z2U A; 1YRV A; 2YHO B; 1TTE A; 4YII U; 5D1L A; 2YBF A; 4R62 A; 4JUE A; 3JVZ A; 3WE5 A; 3A4S A; 4ONL B; 1I7K A; 3OBS A; 4DS2 A; 1JAS A; 3SQV C; 2GRR A; 4V3K A; 3W31 B; 1KPP A; 1KPQ A; 2DAW A; 2BF8 A; 2OXQ A; 1WZW A; 3ONG B; 2K07 A; 1W4U A; 3SY2 C; 1S1Q A; 1M4P A; 4JQU A; 3VON B; 4DDI A; 2DAY A; 4BVU B; 2AWF A; 2KLY A; 1Y8X A; 3HCT B; 4X57 A; 3FN1 B; 3L1Y A; 3P9G A; 4IP3 B; 4P5O G; 2DAX A; 1FXT A; 4V3L A; 5D1K A; 2FUH A; 2H2Y A; 2O25 C; 4W5V A; 5F6E A; 2PWQ A; 5F6U A; 4GPR A; 2Z6O A; 5EGG A; 1J74 A; 5IFR A; 4FH1 A; 2GRO A; 4II2 C; 2CLW B; 4Q5H C; 3OJ4 A; 5F6Y A; 3RPG A; 2XWU A; 2YB6 A; 1QCQ A; 4DHZ F; 2PE6 A; 4ONN B; 1J7D A; 2DMF A; 3UIO A; 4L83 A; 4NR3 B; 4Y1L A; 3K9P A; 2C2V B; 2ESQ A; 2UYZ A; 4TKP A; 5AIT D; 4M1N A; 1ZDN A; 4Y1L C; 5D2M A; 2KJH A; 2F0R A; 3PTF A; 5D0K A; 2LXP A; 3L1Z A; 3BZH A; 5AIU B; 4NRG A; 1ZGU A; 2MT6 A; 2GMI A; 2HLW A; 2ONU A; 4QPL B; 4DHI D; 4ONM A; 1JBB A; 3TGD A; 2E2C A; 4NRI A; 5DFL A; 1U9B A; 3R3Q A; 3JW0 A; 1YLA A; 3E46 A; 5AIT B; 1FZY A; 5D0M A; 1UKX A; 1JAT B; 1Y6L A; 2GRQ A; 2Z5D A; 2UCZ A; 2YZ0 A; 3K9O A; 1PZV A; 4CCG A; 2VRR A; 1Q34 A; 3ZQS A; 5JNE B; 1J7D B; 4ONL A; 2BEP A; 3OBX A; 3KPA A; 2F4Z A; 3O2U A; 5HPT C; 1ZUO A; 4A4B C; 1YH2 A; 2GRP A; 1KPS A; 1YF9 A; 3P9H A; #chains in the Genus database with same CATH topology 4EJE A; 2R0J A; 1WZV A; 4NRG B; 3VON C; 3RZ3 A; 2FO3 A; 4Q5E C; 1UZX A; 4MDK A; 1C4Z D; 2CYX A; 3H8K A; 2Q0V A; 2OB4 A; 4AUQ A; 2Y9P A; 2GJD A; 1A3S A; 3UGB A; 1FBV C; 5F6W A; 2CLW A; 4WZ3 A; 3UIP A; 4YC1 A; 2ESP A; 2A4D A; 5D1M A; 1Z5S A; 2EKE A; 5F6D A; 2AAK A; 3UIN A; 4ONN A; 2PX9 B; 3A33 A; 3R42 A; 4LAD A; 5F6V A; 3ZNI C; 2EBK A; 4NR3 A; 2EDI A; 2EBM A; 3OBU A; 5KNL C; 2C4P A; 3EVX A; 2NVU C; 3HCU B; 3CEG A; 2C2V C; 4AP4 B; 2ESO A; 4A49 B; 4DDG A; 4BWF A; 5AIE B; 1U9A A; 3E95 A; 1Z3D A; 1M4Q A; 3F92 A; 2O25 A; 2ESK A; 2GRN A; 3E95 C; 2GMI B; 3EB6 B; 2AYV A; 2Y9M A; 4S3O A; 5F6X A; 3RCZ B; 5FER B; 4ONM B; 4ZNY A; 3FSH A; 1X23 A; 2QGX A; 2Z6P A; 3OBQ A; 4LDT C; 4NRI B; 5FQ2 A; 2A7L A; 1JAT A; 1AYZ A; 4A4C C; 2Y4W A; 2F4W A; 4DHJ C; 1Z2U A; 1YRV A; 2YHO B; 1TTE A; 4YII U; 5D1L A; 2YBF A; 4R62 A; 4JUE A; 3JVZ A; 3WE5 A; 3A4S A; 4ONL B; 1I7K A; 3OBS A; 4DS2 A; 1JAS A; 3SQV C; 2GRR A; 4V3K A; 3W31 B; 1KPP A; 1KPQ A; 2DAW A; 2BF8 A; 2OXQ A; 1WZW A; 3ONG B; 2K07 A; 1W4U A; 3SY2 C; 1S1Q A; 1M4P A; 4JQU A; 3VON B; 4DDI A; 2DAY A; 4BVU B; 2AWF A; 2KLY A; 1Y8X A; 3HCT B; 4X57 A; 3FN1 B; 3L1Y A; 3P9G A; 4IP3 B; 4P5O G; 2DAX A; 1FXT A; 4V3L A; 5D1K A; 2FUH A; 2H2Y A; 2O25 C; 4W5V A; 5F6E A; 2PWQ A; 5F6U A; 4GPR A; 2Z6O A; 5EGG A; 1J74 A; 5IFR A; 4FH1 A; 2GRO A; 4II2 C; 2CLW B; 4Q5H C; 3OJ4 A; 5F6Y A; 3RPG A; 2XWU A; 2YB6 A; 1QCQ A; 4DHZ F; 2PE6 A; 4ONN B; 1J7D A; 2DMF A; 3UIO A; 4L83 A; 4NR3 B; 4Y1L A; 3K9P A; 2C2V B; 2ESQ A; 2UYZ A; 4TKP A; 5AIT D; 4M1N A; 1ZDN A; 4Y1L C; 5D2M A; 2KJH A; 2F0R A; 3PTF A; 5D0K A; 2LXP A; 3L1Z A; 3BZH A; 5AIU B; 4NRG A; 1ZGU A; 2MT6 A; 2GMI A; 2HLW A; 2ONU A; 4QPL B; 4DHI D; 4ONM A; 1JBB A; 3TGD A; 2E2C A; 4NRI A; 5DFL A; 1U9B A; 3R3Q A; 3JW0 A; 1YLA A; 3E46 A; 5AIT B; 1FZY A; 5D0M A; 1UKX A; 1JAT B; 1Y6L A; 2GRQ A; 2Z5D A; 2UCZ A; 2YZ0 A; 3K9O A; 1PZV A; 4CCG A; 2VRR A; 1Q34 A; 3ZQS A; 5JNE B; 1J7D B; 4ONL A; 2BEP A; 3OBX A; 3KPA A; 2F4Z A; 3O2U A; 5HPT C; 1ZUO A; 4A4B C; 1YH2 A; 2GRP A; 1KPS A; 1YF9 A; 3P9H A; #chains in the Genus database with same CATH homology 4EJE A; 2R0J A; 1WZV A; 4NRG B; 3VON C; 3RZ3 A; 2FO3 A; 4Q5E C; 1UZX A; 4MDK A; 1C4Z D; 2CYX A; 3H8K A; 2Q0V A; 2OB4 A; 4AUQ A; 2Y9P A; 2GJD A; 1A3S A; 3UGB A; 1FBV C; 5F6W A; 2CLW A; 4WZ3 A; 3UIP A; 4YC1 A; 2ESP A; 2A4D A; 5D1M A; 1Z5S A; 2EKE A; 5F6D A; 2AAK A; 3UIN A; 4ONN A; 2PX9 B; 3A33 A; 3R42 A; 4LAD A; 5F6V A; 3ZNI C; 2EBK A; 4NR3 A; 2EDI A; 2EBM A; 3OBU A; 5KNL C; 2C4P A; 3EVX A; 2NVU C; 3HCU B; 3CEG A; 2C2V C; 4AP4 B; 2ESO A; 4A49 B; 4DDG A; 4BWF A; 5AIE B; 1U9A A; 3E95 A; 1Z3D A; 1M4Q A; 3F92 A; 2O25 A; 2ESK A; 2GRN A; 3E95 C; 2GMI B; 3EB6 B; 2AYV A; 2Y9M A; 4S3O A; 5F6X A; 3RCZ B; 5FER B; 4ONM B; 4ZNY A; 3FSH A; 1X23 A; 2QGX A; 2Z6P A; 3OBQ A; 4LDT C; 4NRI B; 5FQ2 A; 2A7L A; 1JAT A; 1AYZ A; 4A4C C; 2Y4W A; 2F4W A; 4DHJ C; 1Z2U A; 1YRV A; 2YHO B; 1TTE A; 4YII U; 5D1L A; 2YBF A; 4R62 A; 4JUE A; 3JVZ A; 3WE5 A; 3A4S A; 4ONL B; 1I7K A; 3OBS A; 4DS2 A; 1JAS A; 3SQV C; 2GRR A; 4V3K A; 3W31 B; 1KPP A; 1KPQ A; 2DAW A; 2BF8 A; 2OXQ A; 1WZW A; 3ONG B; 2K07 A; 1W4U A; 3SY2 C; 1S1Q A; 1M4P A; 4JQU A; 3VON B; 4DDI A; 2DAY A; 4BVU B; 2AWF A; 2KLY A; 1Y8X A; 3HCT B; 4X57 A; 3FN1 B; 3L1Y A; 3P9G A; 4IP3 B; 4P5O G; 2DAX A; 1FXT A; 4V3L A; 5D1K A; 2FUH A; 2H2Y A; 2O25 C; 4W5V A; 5F6E A; 2PWQ A; 5F6U A; 4GPR A; 2Z6O A; 5EGG A; 1J74 A; 5IFR A; 4FH1 A; 2GRO A; 4II2 C; 2CLW B; 4Q5H C; 3OJ4 A; 5F6Y A; 3RPG A; 2XWU A; 2YB6 A; 1QCQ A; 4DHZ F; 2PE6 A; 4ONN B; 1J7D A; 2DMF A; 3UIO A; 4L83 A; 4NR3 B; 4Y1L A; 3K9P A; 2C2V B; 2ESQ A; 2UYZ A; 4TKP A; 5AIT D; 4M1N A; 1ZDN A; 4Y1L C; 5D2M A; 2KJH A; 2F0R A; 3PTF A; 5D0K A; 2LXP A; 3L1Z A; 3BZH A; 5AIU B; 4NRG A; 1ZGU A; 2MT6 A; 2GMI A; 2HLW A; 2ONU A; 4QPL B; 4DHI D; 4ONM A; 1JBB A; 3TGD A; 2E2C A; 4NRI A; 5DFL A; 1U9B A; 3R3Q A; 3JW0 A; 1YLA A; 3E46 A; 5AIT B; 1FZY A; 5D0M A; 1UKX A; 1JAT B; 1Y6L A; 2GRQ A; 2Z5D A; 2UCZ A; 2YZ0 A; 3K9O A; 1PZV A; 4CCG A; 2VRR A; 1Q34 A; 3ZQS A; 5JNE B; 1J7D B; 4ONL A; 2BEP A; 3OBX A; 3KPA A; 2F4Z A; 3O2U A; 5HPT C; 1ZUO A; 4A4B C; 1YH2 A; 2GRP A; 1KPS A; 1YF9 A; 3P9H A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
