The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
42
|
sequence length |
150
|
structure length |
150
|
Chain Sequence |
AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRIKLDILADKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural Basis for the Ring Catalyzed Synthesis of K63 Linked Ubiquitin Chains
pubmed doi rcsb |
| molecule tags |
Ligase/signaling protein
|
| source organism |
Rattus norvegicus
|
| molecule keywords |
E3 UBIQUITIN-PROTEIN LIGASE RNF4
|
| total genus |
42
|
| structure length |
150
|
| sequence length |
150
|
| chains with identical sequence |
E
|
| ec nomenclature |
ec
2.3.2.23: E2 ubiquitin-conjugating enzyme. |
| pdb deposition date | 2015-02-17 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00179 | UQ_con | Ubiquitin-conjugating enzyme |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Ubiquitin Conjugating Enzyme | Ubiquitin Conjugating Enzyme |
#chains in the Genus database with same CATH superfamily 3E46 A; 3K9P A; 2O25 C; 1J74 A; 2KLY A; 2UYZ A; 2DMF A; 3CEG A; 4CCG A; 4DDG A; 2F0R A; 2F4Z A; 4AP4 B; 3FN1 B; 5D1L A; 5F6Y A; 2DAY A; 4LDT C; 3RZ3 A; 2A4D A; 1Z2U A; 4NR3 A; 2C2V C; 2AWF A; 1JBB A; 2YB6 A; 4NR3 B; 4V3K A; 4YII U; 1Z5S A; 1Q34 A; 2LXP A; 3H8K A; 3L1Y A; 3OBU A; 4II2 C; 4R62 A; 4W5V A; 5KNL C; 4A49 B; 1KPP A; 5HPT C; 3HCU B; 1ZGU A; 5FQ2 A; 2BF8 A; 4ONL B; 2DAX A; 3WE5 A; 1PZV A; 3ZNI C; 1QCQ A; 3P9H A; 4DHI D; 3JW0 A; 3OBX A; 1J7D B; 3PTF A; 1I7K A; 2VRR A; 2PWQ A; 3HCT B; 4BWF A; 5D1M A; 4ONM B; 3SQV C; 4QPL B; 4Y1L A; 2C4P A; 3OBS A; 4WZ3 A; 3EB6 B; 4YC1 A; 4NRG A; 5F6D A; 5F6W A; 4Q5H C; 1Y6L A; 2FUH A; 4X57 A; 3VON C; 5D0K A; 3SY2 C; 2GRO A; 2ESQ A; 4Q5E C; 5IFR A; 2BEP A; 1AYZ A; 2UCZ A; 3UIO A; 3K9O A; 3OBQ A; 5AIU B; 1KPS A; 3A33 A; 2QGX A; 1JAT A; 1YF9 A; 2H2Y A; 4P5O G; 1Z3D A; 2GRN A; 1FZY A; 1WZV A; 4NRI A; 1M4P A; 5F6E A; 1U9A A; 4NRI B; 2DAW A; 5D2M A; 2GRR A; 2MT6 A; 2YZ0 A; 3UIN A; 4JUE A; 4S3O A; 2ESP A; 4V3L A; 4A4C C; 3O2U A; 3KPA A; 1X23 A; 4ONN A; 5F6V A; 4L83 A; 1TTE A; 4ZNY A; 2Z6P A; 2ESO A; 2AYV A; 2GRP A; 3R42 A; 4GPR A; 2NVU C; 4JQU A; 5F6U A; 1ZDN A; 1YLA A; 4LAD A; 4NRG B; 4IP3 B; 3L1Z A; 2GJD A; 3E95 C; 2Y4W A; 4Y1L C; 5EGG A; 5AIT B; 2ONU A; 2CYX A; 1YH2 A; 3F92 A; 1JAT B; 5AIE B; 1FBV C; 3A4S A; 2Y9P A; 2O25 A; 5D1K A; 5FER B; 2EBK A; 2HLW A; 3BZH A; 2Q0V A; 2Z6O A; 1S1Q A; 2EKE A; 2Y9M A; 3ONG B; 1ZUO A; 4M1N A; 5D0M A; 2ESK A; 3P9G A; 3ZQS A; 2C2V B; 2F4W A; 3RPG A; 3EVX A; 3W31 B; 2R0J A; 3UGB A; 4ONN B; 5DFL A; 4DS2 A; 3JVZ A; 2GRQ A; 3TGD A; 4DHJ C; 3RCZ B; 1UKX A; 3R3Q A; 4DHZ F; 2EDI A; 1FXT A; 2OXQ A; 4A4B C; 5JNE B; 1U9B A; 1UZX A; 4MDK A; 4DDI A; 4AUQ A; 1KPQ A; 1M4Q A; 4BVU B; 1A3S A; 3UIP A; 2Z5D A; 5AIT D; 4ONL A; 2A7L A; 2AAK A; 2XWU A; 4FH1 A; 1JAS A; 2K07 A; 3OJ4 A; 2PX9 B; 1C4Z D; 1J7D A; 1WZW A; 1Y8X A; 2PE6 A; 4TKP A; 4EJE A; 2E2C A; 3VON B; 3E95 A; 1W4U A; 2YHO B; 5F6X A; 4ONM A; 2EBM A; 2CLW A; 2YBF A; 2OB4 A; 2CLW B; 2FO3 A; 1YRV A; 2GMI A; 2KJH A; 3FSH A; 2GMI B; #chains in the Genus database with same CATH topology 3E46 A; 3K9P A; 2O25 C; 1J74 A; 2KLY A; 2UYZ A; 2DMF A; 3CEG A; 4CCG A; 4DDG A; 2F0R A; 2F4Z A; 4AP4 B; 3FN1 B; 5D1L A; 5F6Y A; 2DAY A; 4LDT C; 3RZ3 A; 2A4D A; 1Z2U A; 4NR3 A; 2C2V C; 2AWF A; 1JBB A; 2YB6 A; 4NR3 B; 4V3K A; 4YII U; 1Z5S A; 1Q34 A; 2LXP A; 3H8K A; 3L1Y A; 3OBU A; 4II2 C; 4R62 A; 4W5V A; 5KNL C; 4A49 B; 1KPP A; 5HPT C; 3HCU B; 1ZGU A; 5FQ2 A; 2BF8 A; 4ONL B; 2DAX A; 3WE5 A; 1PZV A; 3ZNI C; 1QCQ A; 3P9H A; 4DHI D; 3JW0 A; 3OBX A; 1J7D B; 3PTF A; 1I7K A; 2VRR A; 2PWQ A; 3HCT B; 4BWF A; 5D1M A; 4ONM B; 3SQV C; 4QPL B; 4Y1L A; 2C4P A; 3OBS A; 4WZ3 A; 3EB6 B; 4YC1 A; 4NRG A; 5F6D A; 5F6W A; 4Q5H C; 1Y6L A; 2FUH A; 4X57 A; 3VON C; 5D0K A; 3SY2 C; 2GRO A; 2ESQ A; 4Q5E C; 5IFR A; 2BEP A; 1AYZ A; 2UCZ A; 3UIO A; 3K9O A; 3OBQ A; 5AIU B; 1KPS A; 3A33 A; 2QGX A; 1JAT A; 1YF9 A; 2H2Y A; 4P5O G; 1Z3D A; 2GRN A; 1FZY A; 1WZV A; 4NRI A; 1M4P A; 5F6E A; 1U9A A; 4NRI B; 2DAW A; 5D2M A; 2GRR A; 2MT6 A; 2YZ0 A; 3UIN A; 4JUE A; 4S3O A; 2ESP A; 4V3L A; 4A4C C; 3O2U A; 3KPA A; 1X23 A; 4ONN A; 5F6V A; 4L83 A; 1TTE A; 4ZNY A; 2Z6P A; 2ESO A; 2AYV A; 2GRP A; 3R42 A; 4GPR A; 2NVU C; 4JQU A; 5F6U A; 1ZDN A; 1YLA A; 4LAD A; 4NRG B; 4IP3 B; 3L1Z A; 2GJD A; 3E95 C; 2Y4W A; 4Y1L C; 5EGG A; 5AIT B; 2ONU A; 2CYX A; 1YH2 A; 3F92 A; 1JAT B; 5AIE B; 1FBV C; 3A4S A; 2Y9P A; 2O25 A; 5D1K A; 5FER B; 2EBK A; 2HLW A; 3BZH A; 2Q0V A; 2Z6O A; 1S1Q A; 2EKE A; 2Y9M A; 3ONG B; 1ZUO A; 4M1N A; 5D0M A; 2ESK A; 3P9G A; 3ZQS A; 2C2V B; 2F4W A; 3RPG A; 3EVX A; 3W31 B; 2R0J A; 3UGB A; 4ONN B; 5DFL A; 4DS2 A; 3JVZ A; 2GRQ A; 3TGD A; 4DHJ C; 3RCZ B; 1UKX A; 3R3Q A; 4DHZ F; 2EDI A; 1FXT A; 2OXQ A; 4A4B C; 5JNE B; 1U9B A; 1UZX A; 4MDK A; 4DDI A; 4AUQ A; 1KPQ A; 1M4Q A; 4BVU B; 1A3S A; 3UIP A; 2Z5D A; 5AIT D; 4ONL A; 2A7L A; 2AAK A; 2XWU A; 4FH1 A; 1JAS A; 2K07 A; 3OJ4 A; 2PX9 B; 1C4Z D; 1J7D A; 1WZW A; 1Y8X A; 2PE6 A; 4TKP A; 4EJE A; 2E2C A; 3VON B; 3E95 A; 1W4U A; 2YHO B; 5F6X A; 4ONM A; 2EBM A; 2CLW A; 2YBF A; 2OB4 A; 2CLW B; 2FO3 A; 1YRV A; 2GMI A; 2KJH A; 3FSH A; 2GMI B; #chains in the Genus database with same CATH homology 3E46 A; 3K9P A; 2O25 C; 1J74 A; 2KLY A; 2UYZ A; 2DMF A; 3CEG A; 4CCG A; 4DDG A; 2F0R A; 2F4Z A; 4AP4 B; 3FN1 B; 5D1L A; 5F6Y A; 2DAY A; 4LDT C; 3RZ3 A; 2A4D A; 1Z2U A; 4NR3 A; 2C2V C; 2AWF A; 1JBB A; 2YB6 A; 4NR3 B; 4V3K A; 4YII U; 1Z5S A; 1Q34 A; 2LXP A; 3H8K A; 3L1Y A; 3OBU A; 4II2 C; 4R62 A; 4W5V A; 5KNL C; 4A49 B; 1KPP A; 5HPT C; 3HCU B; 1ZGU A; 5FQ2 A; 2BF8 A; 4ONL B; 2DAX A; 3WE5 A; 1PZV A; 3ZNI C; 1QCQ A; 3P9H A; 4DHI D; 3JW0 A; 3OBX A; 1J7D B; 3PTF A; 1I7K A; 2VRR A; 2PWQ A; 3HCT B; 4BWF A; 5D1M A; 4ONM B; 3SQV C; 4QPL B; 4Y1L A; 2C4P A; 3OBS A; 4WZ3 A; 3EB6 B; 4YC1 A; 4NRG A; 5F6D A; 5F6W A; 4Q5H C; 1Y6L A; 2FUH A; 4X57 A; 3VON C; 5D0K A; 3SY2 C; 2GRO A; 2ESQ A; 4Q5E C; 5IFR A; 2BEP A; 1AYZ A; 2UCZ A; 3UIO A; 3K9O A; 3OBQ A; 5AIU B; 1KPS A; 3A33 A; 2QGX A; 1JAT A; 1YF9 A; 2H2Y A; 4P5O G; 1Z3D A; 2GRN A; 1FZY A; 1WZV A; 4NRI A; 1M4P A; 5F6E A; 1U9A A; 4NRI B; 2DAW A; 5D2M A; 2GRR A; 2MT6 A; 2YZ0 A; 3UIN A; 4JUE A; 4S3O A; 2ESP A; 4V3L A; 4A4C C; 3O2U A; 3KPA A; 1X23 A; 4ONN A; 5F6V A; 4L83 A; 1TTE A; 4ZNY A; 2Z6P A; 2ESO A; 2AYV A; 2GRP A; 3R42 A; 4GPR A; 2NVU C; 4JQU A; 5F6U A; 1ZDN A; 1YLA A; 4LAD A; 4NRG B; 4IP3 B; 3L1Z A; 2GJD A; 3E95 C; 2Y4W A; 4Y1L C; 5EGG A; 5AIT B; 2ONU A; 2CYX A; 1YH2 A; 3F92 A; 1JAT B; 5AIE B; 1FBV C; 3A4S A; 2Y9P A; 2O25 A; 5D1K A; 5FER B; 2EBK A; 2HLW A; 3BZH A; 2Q0V A; 2Z6O A; 1S1Q A; 2EKE A; 2Y9M A; 3ONG B; 1ZUO A; 4M1N A; 5D0M A; 2ESK A; 3P9G A; 3ZQS A; 2C2V B; 2F4W A; 3RPG A; 3EVX A; 3W31 B; 2R0J A; 3UGB A; 4ONN B; 5DFL A; 4DS2 A; 3JVZ A; 2GRQ A; 3TGD A; 4DHJ C; 3RCZ B; 1UKX A; 3R3Q A; 4DHZ F; 2EDI A; 1FXT A; 2OXQ A; 4A4B C; 5JNE B; 1U9B A; 1UZX A; 4MDK A; 4DDI A; 4AUQ A; 1KPQ A; 1M4Q A; 4BVU B; 1A3S A; 3UIP A; 2Z5D A; 5AIT D; 4ONL A; 2A7L A; 2AAK A; 2XWU A; 4FH1 A; 1JAS A; 2K07 A; 3OJ4 A; 2PX9 B; 1C4Z D; 1J7D A; 1WZW A; 1Y8X A; 2PE6 A; 4TKP A; 4EJE A; 2E2C A; 3VON B; 3E95 A; 1W4U A; 2YHO B; 5F6X A; 4ONM A; 2EBM A; 2CLW A; 2YBF A; 2OB4 A; 2CLW B; 2FO3 A; 1YRV A; 2GMI A; 2KJH A; 3FSH A; 2GMI B;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
