The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
114
|
Knots found |
|
sequence length |
380
|
structure length |
368
|
Chain Sequence |
GAFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPEDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPKKLVF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The Crystal Structure of Tetrameric Methionine Adenosyltransferase from Rat Liver Reveals the Methionine-Binding Site
pubmed doi rcsb |
| molecule keywords |
METHIONINE ADENOSYLTRANSFERASE, ALPHA FORM
|
| molecule tags |
Transferase
|
| source organism |
Rattus norvegicus
|
| total genus |
114
|
| structure length |
368
|
| sequence length |
380
|
| chains with identical sequence |
B
|
| other databases |
 KnotProt 2.0: K +31
|
| ec nomenclature |
ec
2.5.1.6: Methionine adenosyltransferase. |
| pdb deposition date | 1999-09-20 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00438 | S-AdoMet_synt_N | S-adenosylmethionine synthetase, N-terminal domain |
| A | PF02772 | S-AdoMet_synt_M | S-adenosylmethionine synthetase, central domain |
| A | PF02773 | S-AdoMet_synt_C | S-adenosylmethionine synthetase, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 | ||
| Alpha Beta | 2-Layer Sandwich | GMP Synthetase; Chain A, domain 3 | GMP Synthetase; Chain A, domain 3 |
#chains in the Genus database with same CATH superfamily 2YWC A; 5T8S A; 2YWB A; 4KTV A; 3S82 A; 1O90 A; 4WS9 A; 4KTT A; 3A4I A; 3SO4 A; 4LE5 A; 3IML A; 5A19 A; 1O92 A; 1XRB A; 4ODJ A; 5A1G A; 2P02 A; 3TDE A; 3UOW A; 1MXA A; 3RV2 A; 1RG9 A; 1P7L A; 2DPL A; 4NDN A; 5H9U A; 1XRC A; 1O9T A; 4K0B A; 1MXC A; 1FUG A; 5A1I A; 4L7I A; 4L4Q A; 4HPV A; 2OBV A; 1QM4 A; 1O93 A; 5T8T A; 1GPM A; 1XRA A; 3TQI A; 1MXB A; 4L2Z A; #chains in the Genus database with same CATH topology 2JNV A; 4PRO C; 1PU1 A; 1LCI A; 1WCJ A; 4R1L A; 2PT7 G; 1XNR C; 3C5E A; 3LAX A; 4LE5 A; 3PBK A; 3UOW A; 3UEB A; 2E8E A; 3RV2 A; 1IBL C; 3LNO A; 2NCL A; 4RM2 A; 4LF6 C; 4D57 A; 4ZLP A; 2ZZN A; 4R0M A; 5BSR A; 5T8S A; 4ZJZ A; 3DHV A; 2Y4O A; 4MH4 A; 3S82 A; 4DV5 C; 4DR4 C; 5BST A; 4D4G A; 3R9W A; 4DR2 C; 3SO4 A; 3EER A; 4JI5 C; 5BSM A; 4BSZ A; 2P02 A; 3VNR A; 5K85 A; 1RG9 A; 4NDN A; 2UU9 C; 2MCQ A; 2P2Q A; 4LF9 C; 5A1I A; 4DG9 A; 1PG3 A; 5AE2 A; 4GS5 A; 4PUG A; 4L2Z A; 4JV5 C; 1P4E A; 4DCV A; 4ISB A; 3CQ2 A; 4RMN A; 2VSQ A; 5IWA C; 3IEV A; 1HH2 P; 2D1S A; 2Y4N A; 1ULT A; 4D4I A; 2M5H A; 3N54 B; 4JI0 C; 3GR1 A; 3UZ0 A; 5A1G A; 4BBY A; 2D1Q A; 2WP0 C; 2OO4 A; 1VEH A; 4B3R C; 1BA3 A; 1ZB8 A; 2ONF A; 3H2T A; 2EGT A; 1KKG A; 4KTV A; 4G37 A; 2UXB C; 4FTF A; 1N36 C; 2F4V C; 1N32 C; 3DAY A; 1N2F A; 1V25 A; 1HR0 C; 4RM3 A; 2UUA C; 5AE1 A; 4JI2 C; 4DR6 C; 4D56 A; 4LFB C; 1J5E C; 5DV9 A; 4LF4 C; 1T5D X; 1MDB A; 2YWC A; 3A25 A; 3PRO C; 2UUC C; 4DUZ C; 4XX2 A; 1WF3 A; 3IEU A; 1EGA A; 4OYC A; 2OPL B; 4DV7 C; 1WH9 A; 4YHH C; 4DCS A; 2E0G A; 1FUG A; 2Y27 A; 3VNS A; 2UXD C; 3VNQ A; 4DV6 C; 1TH5 A; 1MDF A; 2YCB A; 2YWB A; 2PN2 A; 2D7V A; 2VQF C; 4OXI A; 4BCA A; 4KTT A; 4NXN C; 3RG2 A; 2P2B A; 3N2Q A; 3IML A; 1XRB A; 4NXM C; 4BC7 A; 5H9U A; 1XRC A; 1O9T A; 2OPL A; 2P2J A; 4FUT A; 3NYR A; 3A26 A; 2UXC C; 3CQ1 A; 4RVO A; 1XNQ C; 3R9X A; 2HHH C; 1N33 C; 3CW8 X; 4X62 C; 2DHM A; 3A4I A; 2PRO A; 4LF7 C; 1USP B; 2QVZ X; 2E8C A; 4IR7 A; 1I94 C; 2D1T A; 3A9V A; 2VQE C; 4MTN A; 1P4E C; 3E7X A; 4DG8 A; 1MKY A; 1LQL A; 5FLX D; 4LFC C; 3FCE A; 2D1R A; 5BSW A; 3ETO A; 4WS9 A; 2P2M A; 2JMP A; 4DR3 C; 4JI7 C; 3JAM D; 3DLP X; 4RLQ A; 4X66 C; 4JYA C; 4K0K C; 3LNV A; 1VLA A; 5BSV A; 3TR3 A; 4DCT A; 2Z51 A; 3NPD A; 2ASB A; 3G7S A; 1USP A; 5LMU C; 2OBV A; 4NOZ A; 1MXB A; 3I08 A; 3I07 A; 2HJG A; 1XS3 A; 4B3S C; 4X64 C; 1XMQ C; 2XR1 A; 2KZ0 A; 4WV3 A; 2BH1 X; 4DUY C; 1M6X A; 3IPL A; 1JOS A; 3B7W A; 5ADZ A; 5BUQ A; 5E7Q A; 4LF8 C; 4GXQ A; 2MM9 A; 1O93 A; 3GPC A; 1XRA A; 4DV1 C; 2QW0 X; 3A9U A; 3L8C A; 4DR7 C; 1QWI A; 4TPS B; 4BC9 A; 3OTO C; 3AF6 A; 4GKJ C; 2P20 A; 1XMO C; 1PG4 A; 4U5Y D; 1HNW C; 1UKK A; 4GXR A; 3E7W A; 1IB8 A; 3UX3 A; 3T1H C; 5BSU A; 3L95 X; 4DV3 C; 3KXW A; 2DYJ A; 5AE3 A; 4DR1 C; 2E7G A; 2D28 C; 4PZP A; 5IFI A; 5LMN C; 2CXC A; 4B3T C; 1ML8 A; 4LFA C; 4DR5 C; 4KHP C; 1P7L A; 3AY0 A; 3TUF A; 1XHJ A; 2M5O A; 3CQ3 A; 4HPV A; 3ETC A; 4FUQ A; 4RVN A; 5KYT A; 5BUR A; 5K8F A; 1N34 C; 1K0R A; 4I9G A; 3J80 D; 4JI4 C; 4DV2 C; 4G36 A; 4AQY C; 1YJ7 A; 4IZ6 A; 3UX2 A; 1MXC A; 2WD9 A; 4G1I A; 3LGX A; 2CU6 A; 2E8F A; 5GTD A; 1IBK C; 2ATW A; 1FJG C; 1ZB9 A; 3R44 A; 4X65 C; 3NI2 A; 1HNZ C; 3PES A; 5IT9 D; 2AYA A; 4K0B A; 2CY1 A; 1FLO A; 3LUS A; 5A2Q D; 2ZZM A; 2D27 A; 5KEI A; 2ZM6 C; 1M6X C; 4PUI A; 5LCI A; 4PHT A; 1V60 A; 3AF5 A; 3NYQ A; 3FCC A; 1NYE A; 5KYV A; 4L4Q A; 2P2F A; 3CW9 A; 4DCU A; 4JI6 C; 2QL8 A; 4DV0 C; 4PUH A; 1MD9 A; 4JM1 A; 2E5L C; 1O90 A; 1NY8 A; 5CZX A; 5JRH A; 1PA4 A; 4DV4 C; 1L2F A; 2V7B A; 1O92 A; 4YY3 C; 4ODJ A; 4LF5 C; 1MXA A; 3O2E A; 2MMA B; 3EQ6 A; 2KZF A; 4JI3 C; 1AMU A; 4L7I A; 5BR8 C; 1V26 A; 1QM4 A; 1T5H X; 5T8T A; 1GPM A; 5CZV A; 5BUS A; 3T1Y C; 2KDN A; 2VZE A; 4JI1 C; 4JI8 C; 1IBM C; 4B3M C; 3J81 D; 2YX1 A; 2BJO A; 4RLF A; 4R1M A; 1HNX C; 5A19 A; 4OX9 C; 2QVX X; 1UWD A; 3TDE A; 4I9F A; 1RY2 A; 2DPL A; 3CJE A; 4GKK C; 2QVY X; 4EAT A; 2UUB C; 3GKU A; 3GR0 A; 3K6R A; 3TQI A; #chains in the Genus database with same CATH homology 4PRO C; 1LCI A; 4R1L A; 2PT7 G; 1XNR C; 3C5E A; 3LAX A; 4LE5 A; 3PBK A; 3UOW A; 2E8E A; 3RV2 A; 1IBL C; 4RM2 A; 4LF6 C; 4D57 A; 4ZLP A; 4R0M A; 5BSR A; 5T8S A; 4ZJZ A; 3DHV A; 2Y4O A; 4MH4 A; 3S82 A; 4DV5 C; 4DR4 C; 5BST A; 4D4G A; 3R9W A; 4DR2 C; 3SO4 A; 3EER A; 4JI5 C; 5BSM A; 4BSZ A; 2P02 A; 3VNR A; 5K85 A; 1RG9 A; 4NDN A; 2UU9 C; 2P2Q A; 4LF9 C; 5A1I A; 4DG9 A; 1PG3 A; 5AE2 A; 4GS5 A; 4L2Z A; 4JV5 C; 4DCV A; 4ISB A; 4RMN A; 2VSQ A; 5IWA C; 3IEV A; 1HH2 P; 2D1S A; 2Y4N A; 1ULT A; 4D4I A; 3N54 B; 4JI0 C; 3GR1 A; 3UZ0 A; 5A1G A; 4BBY A; 2D1Q A; 2WP0 C; 2OO4 A; 4B3R C; 1BA3 A; 1ZB8 A; 2ONF A; 3H2T A; 2EGT A; 1KKG A; 4KTV A; 4G37 A; 2UXB C; 4FTF A; 1N36 C; 2F4V C; 1N32 C; 3DAY A; 1N2F A; 1V25 A; 1HR0 C; 4RM3 A; 2UUA C; 5AE1 A; 4JI2 C; 4DR6 C; 4D56 A; 4LFB C; 1J5E C; 5DV9 A; 4LF4 C; 1T5D X; 1MDB A; 2YWC A; 3PRO C; 2UUC C; 4DUZ C; 4XX2 A; 1WF3 A; 3IEU A; 1EGA A; 4OYC A; 2OPL B; 4DV7 C; 1WH9 A; 4YHH C; 4DCS A; 2E0G A; 1FUG A; 2Y27 A; 3VNS A; 2UXD C; 3VNQ A; 4DV6 C; 1MDF A; 2YCB A; 2YWB A; 2PN2 A; 2D7V A; 2VQF C; 4OXI A; 4BCA A; 4KTT A; 4NXN C; 3RG2 A; 2P2B A; 3N2Q A; 3IML A; 1XRB A; 4NXM C; 4BC7 A; 5H9U A; 1XRC A; 1O9T A; 2OPL A; 2P2J A; 4FUT A; 3NYR A; 2UXC C; 4RVO A; 1XNQ C; 3R9X A; 2HHH C; 1N33 C; 3CW8 X; 4X62 C; 3A4I A; 2PRO A; 4LF7 C; 1USP B; 2QVZ X; 2E8C A; 4IR7 A; 1I94 C; 2D1T A; 3A9V A; 2VQE C; 4MTN A; 3E7X A; 4DG8 A; 1MKY A; 1LQL A; 5FLX D; 4LFC C; 3FCE A; 2D1R A; 5BSW A; 3ETO A; 4WS9 A; 2P2M A; 2JMP A; 4DR3 C; 4JI7 C; 3JAM D; 3DLP X; 4RLQ A; 4X66 C; 4JYA C; 4K0K C; 3LNV A; 1VLA A; 5BSV A; 4DCT A; 3NPD A; 2ASB A; 3G7S A; 1USP A; 5LMU C; 2OBV A; 4NOZ A; 1MXB A; 3I08 A; 3I07 A; 2HJG A; 4B3S C; 4X64 C; 1XMQ C; 2XR1 A; 4WV3 A; 2BH1 X; 4DUY C; 3IPL A; 1JOS A; 3B7W A; 5ADZ A; 5BUQ A; 5E7Q A; 4LF8 C; 4GXQ A; 1O93 A; 3GPC A; 1XRA A; 4DV1 C; 2QW0 X; 3A9U A; 3L8C A; 4DR7 C; 1QWI A; 4TPS B; 4BC9 A; 3OTO C; 3AF6 A; 4GKJ C; 2P20 A; 1XMO C; 1PG4 A; 4U5Y D; 1HNW C; 1UKK A; 4GXR A; 3E7W A; 3T1H C; 5BSU A; 3L95 X; 4DV3 C; 3KXW A; 2DYJ A; 5AE3 A; 4DR1 C; 2E7G A; 2D28 C; 4PZP A; 5IFI A; 5LMN C; 2CXC A; 4B3T C; 1ML8 A; 4LFA C; 4DR5 C; 4KHP C; 1P7L A; 3TUF A; 4HPV A; 3ETC A; 4FUQ A; 4RVN A; 5KYT A; 5BUR A; 5K8F A; 1N34 C; 1K0R A; 4I9G A; 3J80 D; 4JI4 C; 4DV2 C; 4G36 A; 4AQY C; 1YJ7 A; 4IZ6 A; 1MXC A; 2WD9 A; 4G1I A; 3LGX A; 2E8F A; 5GTD A; 1IBK C; 2ATW A; 1FJG C; 1ZB9 A; 3R44 A; 4X65 C; 3NI2 A; 1HNZ C; 3PES A; 5IT9 D; 2AYA A; 4K0B A; 2CY1 A; 3LUS A; 5A2Q D; 2D27 A; 5KEI A; 2ZM6 C; 4PHT A; 3AF5 A; 3NYQ A; 3FCC A; 1NYE A; 5KYV A; 4L4Q A; 2P2F A; 3CW9 A; 4DCU A; 4JI6 C; 2QL8 A; 4DV0 C; 1MD9 A; 4JM1 A; 2E5L C; 1O90 A; 5CZX A; 5JRH A; 1PA4 A; 4DV4 C; 1L2F A; 2V7B A; 1O92 A; 4YY3 C; 4ODJ A; 4LF5 C; 1MXA A; 3EQ6 A; 2KZF A; 4JI3 C; 1AMU A; 4L7I A; 5BR8 C; 1V26 A; 1QM4 A; 1T5H X; 5T8T A; 1GPM A; 5CZV A; 5BUS A; 3T1Y C; 2VZE A; 4JI1 C; 4JI8 C; 1IBM C; 4B3M C; 3J81 D; 2BJO A; 4RLF A; 4R1M A; 1HNX C; 5A19 A; 4OX9 C; 2QVX X; 3TDE A; 4I9F A; 1RY2 A; 2DPL A; 3CJE A; 4GKK C; 2QVY X; 4EAT A; 2UUB C; 3GKU A; 3GR0 A; 3TQI A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
