1F0I | Genus

Total Genus 194

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	194
sequence length	504
structure length	496
Chain Sequence	AATPHLDAVEQTLRQVSPGLEGDVWERTSGNKLDGSAADPSDWLLQTPGCWGDDKCADRVGTKRLLAKMTENIGNATRTVDISTLAPFPNGAFQDAIVAGLKESAAKGNSLKVRILVGAAPHMNGIPSKYRDKLTAKLGKAAENITLNVASMTTSKTAFSWNHSKILVVDGQSALTGGINSWKDDYLDTTHPVSDVDLALTGPAAGSAGRYLDTLWTWTCKNKSNIASVWFAASGNAGCMPTMHKDTNPKASPATGNVPVIAVGGLGVGIKDVDPKSTFRPDLPTASDTKCVVGLHDNTNADRDYDTVNPEESALRALVASAKGHIEISQQDLNATCPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRGYSQIKSLSEISDTLRNRLANITGGQQAAKTAMCSNLQLATFRSSPNGKWADGHPYAQHHKLVSVDSSTFYIGSKNLYPSWLQDFGYIVESPEAAKQLDAKLLDPQWKYSQETATVDYARGICGA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 496 atoms

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496 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	The first crystal structure of a phospholipase D. pubmed doi rcsb
molecule keywords	PHOSPHOLIPASE D
molecule tags	Hydrolase
total genus	194
structure length	496
sequence length	504
ec nomenclature	ec 3.1.4.4: Phospholipase D.
pdb deposition date	2000-05-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF13091	PLDc_2	PLD-like domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.870.10	Alpha Beta	2-Layer Sandwich	Endonuclease; Chain A	Endonuclease Chain A	1f0iA01
3.30.870.10	Alpha Beta	2-Layer Sandwich	Endonuclease; Chain A	Endonuclease Chain A	1f0iA02

2ZE4A 1QZQA 1BYRA 2C1LA 2F5TX 4GGKA 1F0IA 1V0WA 1XDPA 3QPHA 1RGUA 5BOXA 4H4AA 4GELA 4URJA 5BQTA 5BPDA 2O8RA 1JY1A 1NOPA 3SQ3A 4GENA 2ZE9A 1V0UA 5BPIA 5LZKA 4GEMA 3HSIA 1RG2A 1RFIA 1V0YA 3SQ8A 1RG1A 1RFFA 4GGJA 1V0RA 1RH0A 1BYSA 3SQ7A 1RGTA 1MU9A 3SQ5A 1Q32A 4RCTA 1V0SA 1V0TA 1V0VA 1XDOA 1MU7A
chains in the Genus database with same CATH superfamily

2ZE4A 1QZQA 1BYRA 2C1LA 2F5TX 4GGKA 1F0IA 1V0WA 1XDPA 3QPHA 1RGUA 4A5ZA 3R3PA 1ODGA 5BOXA 4H4AA 4GELA 4URJA 5BQTA 5BPDA 2O8RA 1JY1A 1NOPA 3SQ3A 1CW0A 4GENA 2ZE9A 1V0UA 5BPIA 5LZKA 4GEMA 3HSIA 1RG2A 1RFIA 1V0YA 3SQ8A 1RG1A 1RFFA 4GGJA 1V0RA 1RH0A 1BYSA 2YMBA 3SQ7A 1VSRA 1RGTA 1MU9A 3HRLA 1Q32A 3SQ5A 4RCTA 1V0SA 1V0TA 1V0VA 1XDOA 1MU7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2ZE4 A;  1QZQ A;  1BYR A;  2C1L A;  2F5T X;  4GGK A;  1F0I A;  1V0W A;  1XDP A;  3QPH A;  1RGU A;  5BOX A;  4H4A A;  4GEL A;  4URJ A;  5BQT A;  5BPD A;  2O8R A;  1JY1 A;  1NOP A;  3SQ3 A;  4GEN A;  2ZE9 A;  1V0U A;  5BPI A;  5LZK A;  4GEM A;  3HSI A;  1RG2 A;  1RFI A;  1V0Y A;  3SQ8 A;  1RG1 A;  1RFF A;  4GGJ A;  1V0R A;  1RH0 A;  1BYS A;  3SQ7 A;  1RGT A;  1MU9 A;  3SQ5 A;  1Q32 A;  4RCT A;  1V0S A;  1V0T A;  1V0V A;  1XDO A;  1MU7 A; 
#chains in the Genus database with same CATH topology
 2ZE4 A;  1QZQ A;  1BYR A;  2C1L A;  2F5T X;  4GGK A;  1F0I A;  1V0W A;  1XDP A;  3QPH A;  1RGU A;  4A5Z A;  3R3P A;  1ODG A;  5BOX A;  4H4A A;  4GEL A;  4URJ A;  5BQT A;  5BPD A;  2O8R A;  1JY1 A;  1NOP A;  3SQ3 A;  1CW0 A;  4GEN A;  2ZE9 A;  1V0U A;  5BPI A;  5LZK A;  4GEM A;  3HSI A;  1RG2 A;  1RFI A;  1V0Y A;  3SQ8 A;  1RG1 A;  1RFF A;  4GGJ A;  1V0R A;  1RH0 A;  1BYS A;  2YMB A;  3SQ7 A;  1VSR A;  1RGT A;  1MU9 A;  3HRL A;  1Q32 A;  3SQ5 A;  4RCT A;  1V0S A;  1V0T A;  1V0V A;  1XDO A;  1MU7 A; 
#chains in the Genus database with same CATH homology
 2ZE4 A;  1QZQ A;  1BYR A;  2C1L A;  2F5T X;  4GGK A;  1F0I A;  1V0W A;  1XDP A;  3QPH A;  1RGU A;  5BOX A;  4H4A A;  4GEL A;  4URJ A;  5BQT A;  5BPD A;  2O8R A;  1JY1 A;  1NOP A;  3SQ3 A;  4GEN A;  2ZE9 A;  1V0U A;  5BPI A;  5LZK A;  4GEM A;  3HSI A;  1RG2 A;  1RFI A;  1V0Y A;  3SQ8 A;  1RG1 A;  1RFF A;  4GGJ A;  1V0R A;  1RH0 A;  1BYS A;  3SQ7 A;  1RGT A;  1MU9 A;  3SQ5 A;  1Q32 A;  4RCT A;  1V0S A;  1V0T A;  1V0V A;  1XDO A;  1MU7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1F0IA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations