1FJGP

Structure of the thermus thermophilus 30s ribosomal subunit in complex with the antibiotics streptomycin, spectinomycin, and paromomycin
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
83
structure length
83
Chain Sequence
MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
publication title Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics
pubmed doi rcsb
total genus 22
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2000-08-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00886 Ribosomal_S16 Ribosomal protein S16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1320.10 Alpha Beta 2-Layer Sandwich S16 Ribosomal Protein; Chain: A; S16 Ribosomal Protein; Chain: A; 1fjgP00
1IBMP 4NXNP 1FJGP 4DV0P 4JI1P 2UUCP 4JI8P 2UXDP 4DR5P 4JI0P 1XNRP 4LFAP 4LF4P 4DR4P 4OX9P 2UUBP 4GKJP 4DUYP 4JI4P 2E5LP 4JV5P 4B3MP 4JI5P 4LFBP 1IBKP 1HNWP 1N36P 1HR0P 3T1HP 4YY3P 1XMOP 2UXCP 5IWAP 5BR8P 4X65P 4JI3P 4AQYP 5AJ3P 4YHHP 2F4VP 1N32P 1EMWA 4JI2P 4NXMP 4DV5P 4DV2P 4DV1P 2UUAP 4B3SP 4DR7P 4JI6P 3BN0A 2UXBP 1N34P 4GKKP 1J5EP 4LF6P 4JI7P 1N33P 4X62P 5LMNP 4LFCP 1XMQP 4LF7P 4JYAP 4LF9P 4DV6P 1I94P 2ZM6P 4X64P 2UU9P 3OTOP 3T1YP 4KHPP 1IBLP 4DR6P 4DR3P 4B3RP 4LF5P 4DR2P 1HNZP 4K0KP 4DUZP 2VQFP 4DV4P 4DR1P 5LMUP 4DV7P 4LF8P 4X66P 1XNQP 2VQEP 4DV3P 2HHHP 1HNXP 4B3TP
chains in the Genus database with same CATH superfamily
1IBMP 4NXNP 1FJGP 4DV0P 4JI1P 2UUCP 4JI8P 2UXDP 4DR5P 4JI0P 1XNRP 4LFAP 4LF4P 4DR4P 4OX9P 2UUBP 4GKJP 4DUYP 4JI4P 2E5LP 4JV5P 4B3MP 4JI5P 4LFBP 1IBKP 1HNWP 1N36P 1HR0P 3T1HP 4YY3P 1XMOP 2UXCP 5IWAP 5BR8P 4X65P 4JI3P 4AQYP 5AJ3P 4YHHP 2F4VP 1N32P 1EMWA 4JI2P 4NXMP 4DV5P 4DV2P 4DV1P 2UUAP 4B3SP 4DR7P 4JI6P 3BN0A 2UXBP 1N34P 4GKKP 1J5EP 4LF6P 4JI7P 1N33P 4X62P 5LMNP 4LFCP 1XMQP 4LF7P 4JYAP 4LF9P 4DV6P 1I94P 2ZM6P 4X64P 2UU9P 3OTOP 3T1YP 4KHPP 1IBLP 4DR6P 4DR3P 4B3RP 4LF5P 4DR2P 1HNZP 4K0KP 4DUZP 2VQFP 4DV4P 4DR1P 5LMUP 4DV7P 4LF8P 4X66P 1XNQP 2VQEP 4DV3P 2HHHP 1HNXP 4B3TP
chains in the Genus database with same CATH topology
1IBMP 4NXNP 1FJGP 4DV0P 4JI1P 2UUCP 4JI8P 2UXDP 4DR5P 4JI0P 1XNRP 4LFAP 4LF4P 4DR4P 4OX9P 2UUBP 4GKJP 4DUYP 4JI4P 2E5LP 4JV5P 4B3MP 4JI5P 4LFBP 1IBKP 1HNWP 1N36P 1HR0P 3T1HP 4YY3P 1XMOP 2UXCP 5IWAP 5BR8P 4X65P 4JI3P 4AQYP 5AJ3P 4YHHP 2F4VP 1N32P 1EMWA 4JI2P 4NXMP 4DV5P 4DV2P 4DV1P 2UUAP 4B3SP 4DR7P 4JI6P 3BN0A 2UXBP 1N34P 4GKKP 1J5EP 4LF6P 4JI7P 1N33P 4X62P 5LMNP 4LFCP 1XMQP 4LF7P 4JYAP 4LF9P 4DV6P 1I94P 2ZM6P 4X64P 2UU9P 3OTOP 3T1YP 4KHPP 1IBLP 4DR6P 4DR3P 4B3RP 4LF5P 4DR2P 1HNZP 4K0KP 4DUZP 2VQFP 4DV4P 4DR1P 5LMUP 4DV7P 4LF8P 4X66P 1XNQP 2VQEP 4DV3P 2HHHP 1HNXP 4B3TP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IBM P;  4NXN P;  1FJG P;  4DV0 P;  4JI1 P;  2UUC P;  4JI8 P;  2UXD P;  4DR5 P;  4JI0 P;  1XNR P;  4LFA P;  4LF4 P;  4DR4 P;  4OX9 P;  2UUB P;  4GKJ P;  4DUY P;  4JI4 P;  2E5L P;  4JV5 P;  4B3M P;  4JI5 P;  4LFB P;  1IBK P;  1HNW P;  1N36 P;  1HR0 P;  3T1H P;  4YY3 P;  1XMO P;  2UXC P;  5IWA P;  5BR8 P;  4X65 P;  4JI3 P;  4AQY P;  5AJ3 P;  4YHH P;  2F4V P;  1N32 P;  1EMW A;  4JI2 P;  4NXM P;  4DV5 P;  4DV2 P;  4DV1 P;  2UUA P;  4B3S P;  4DR7 P;  4JI6 P;  3BN0 A;  2UXB P;  1N34 P;  4GKK P;  1J5E P;  4LF6 P;  4JI7 P;  1N33 P;  4X62 P;  5LMN P;  4LFC P;  1XMQ P;  4LF7 P;  4JYA P;  4LF9 P;  4DV6 P;  1I94 P;  2ZM6 P;  4X64 P;  2UU9 P;  3OTO P;  3T1Y P;  4KHP P;  1IBL P;  4DR6 P;  4DR3 P;  4B3R P;  4LF5 P;  4DR2 P;  1HNZ P;  4K0K P;  4DUZ P;  2VQF P;  4DV4 P;  4DR1 P;  5LMU P;  4DV7 P;  4LF8 P;  4X66 P;  1XNQ P;  2VQE P;  4DV3 P;  2HHH P;  1HNX P;  4B3T P; 
#chains in the Genus database with same CATH topology
 1IBM P;  4NXN P;  1FJG P;  4DV0 P;  4JI1 P;  2UUC P;  4JI8 P;  2UXD P;  4DR5 P;  4JI0 P;  1XNR P;  4LFA P;  4LF4 P;  4DR4 P;  4OX9 P;  2UUB P;  4GKJ P;  4DUY P;  4JI4 P;  2E5L P;  4JV5 P;  4B3M P;  4JI5 P;  4LFB P;  1IBK P;  1HNW P;  1N36 P;  1HR0 P;  3T1H P;  4YY3 P;  1XMO P;  2UXC P;  5IWA P;  5BR8 P;  4X65 P;  4JI3 P;  4AQY P;  5AJ3 P;  4YHH P;  2F4V P;  1N32 P;  1EMW A;  4JI2 P;  4NXM P;  4DV5 P;  4DV2 P;  4DV1 P;  2UUA P;  4B3S P;  4DR7 P;  4JI6 P;  3BN0 A;  2UXB P;  1N34 P;  4GKK P;  1J5E P;  4LF6 P;  4JI7 P;  1N33 P;  4X62 P;  5LMN P;  4LFC P;  1XMQ P;  4LF7 P;  4JYA P;  4LF9 P;  4DV6 P;  1I94 P;  2ZM6 P;  4X64 P;  2UU9 P;  3OTO P;  3T1Y P;  4KHP P;  1IBL P;  4DR6 P;  4DR3 P;  4B3R P;  4LF5 P;  4DR2 P;  1HNZ P;  4K0K P;  4DUZ P;  2VQF P;  4DV4 P;  4DR1 P;  5LMU P;  4DV7 P;  4LF8 P;  4X66 P;  1XNQ P;  2VQE P;  4DV3 P;  2HHH P;  1HNX P;  4B3T P; 
#chains in the Genus database with same CATH homology
 1IBM P;  4NXN P;  1FJG P;  4DV0 P;  4JI1 P;  2UUC P;  4JI8 P;  2UXD P;  4DR5 P;  4JI0 P;  1XNR P;  4LFA P;  4LF4 P;  4DR4 P;  4OX9 P;  2UUB P;  4GKJ P;  4DUY P;  4JI4 P;  2E5L P;  4JV5 P;  4B3M P;  4JI5 P;  4LFB P;  1IBK P;  1HNW P;  1N36 P;  1HR0 P;  3T1H P;  4YY3 P;  1XMO P;  2UXC P;  5IWA P;  5BR8 P;  4X65 P;  4JI3 P;  4AQY P;  5AJ3 P;  4YHH P;  2F4V P;  1N32 P;  1EMW A;  4JI2 P;  4NXM P;  4DV5 P;  4DV2 P;  4DV1 P;  2UUA P;  4B3S P;  4DR7 P;  4JI6 P;  3BN0 A;  2UXB P;  1N34 P;  4GKK P;  1J5E P;  4LF6 P;  4JI7 P;  1N33 P;  4X62 P;  5LMN P;  4LFC P;  1XMQ P;  4LF7 P;  4JYA P;  4LF9 P;  4DV6 P;  1I94 P;  2ZM6 P;  4X64 P;  2UU9 P;  3OTO P;  3T1Y P;  4KHP P;  1IBL P;  4DR6 P;  4DR3 P;  4B3R P;  4LF5 P;  4DR2 P;  1HNZ P;  4K0K P;  4DUZ P;  2VQF P;  4DV4 P;  4DR1 P;  5LMU P;  4DV7 P;  4LF8 P;  4X66 P;  1XNQ P;  2VQE P;  4DV3 P;  2HHH P;  1HNX P;  4B3T P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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