4DV5P

Crystal structure of the thermus thermophilus 30s ribosomal subunit with a 16s rrna mutation, a914g, bound with streptomycin
Total Genus 14
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
14
sequence length
83
structure length
83
Chain Sequence
MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome/antibiotic
molecule keywords 16S rRNA
publication title A structural basis for streptomycin resistance
rcsb
total genus 14
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00886 Ribosomal_S16 Ribosomal protein S16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1320.10 Alpha Beta 2-Layer Sandwich S16 Ribosomal Protein; Chain: A; S16 Ribosomal Protein; Chain: A; 4dv5P00
4JI7P 4B3RP 4DUYP 2UUBP 4OX9P 4X66P 4JI5P 4B3MP 2ZM6P 5LMUP 4NXNP 4DR6P 1HNXP 4LF7P 4X62P 4X65P 2F4VP 2VQEP 1XMOP 4DR4P 1HNWP 1XNQP 1IBLP 3BN0A 4DR2P 4DV3P 1HNZP 4LF6P 4LFCP 4DV5P 4KHPP 4LF5P 1IBKP 4YY3P 4DR1P 1N33P 4DV2P 4JV5P 2VQFP 4JI1P 1EMWA 4DR5P 4AQYP 4DV0P 4JI2P 4DR3P 2UU9P 4DUZP 3T1HP 4NXMP 2UXBP 5AJ3P 4DV6P 4GKJP 1FJGP 4JI0P 4DV7P 4YHHP 4LF4P 3T1YP 4LF8P 4K0KP 2HHHP 4B3SP 4JYAP 4JI8P 2E5LP 2UXDP 4LFBP 4X64P 1N32P 4GKKP 4LFAP 4DR7P 4DV1P 1N36P 4LF9P 5LMNP 1XMQP 1XNRP 1IBMP 4B3TP 1J5EP 4JI4P 5BR8P 2UXCP 4JI6P 1I94P 1N34P 2UUAP 4JI3P 1HR0P 3OTOP 4DV4P 2UUCP 5IWAP
chains in the Genus database with same CATH superfamily
4JI7P 4B3RP 4DUYP 2UUBP 4OX9P 4X66P 4JI5P 4B3MP 2ZM6P 5LMUP 4NXNP 4DR6P 1HNXP 4LF7P 4X62P 4X65P 2F4VP 2VQEP 1XMOP 4DR4P 1HNWP 1XNQP 1IBLP 3BN0A 4DR2P 4DV3P 1HNZP 4LF6P 4LFCP 4DV5P 4KHPP 4LF5P 1IBKP 4YY3P 4DR1P 1N33P 4DV2P 4JV5P 2VQFP 4JI1P 1EMWA 4DR5P 4AQYP 4DV0P 4JI2P 4DR3P 2UU9P 4DUZP 3T1HP 4NXMP 2UXBP 5AJ3P 4DV6P 4GKJP 1FJGP 4JI0P 4DV7P 4YHHP 4LF4P 3T1YP 4LF8P 4K0KP 2HHHP 4B3SP 4JYAP 4JI8P 2E5LP 2UXDP 4LFBP 4X64P 1N32P 4GKKP 4LFAP 4DR7P 4DV1P 1N36P 4LF9P 5LMNP 1XMQP 1XNRP 1IBMP 4B3TP 1J5EP 4JI4P 5BR8P 2UXCP 4JI6P 1I94P 1N34P 2UUAP 4JI3P 1HR0P 3OTOP 4DV4P 2UUCP 5IWAP
chains in the Genus database with same CATH topology
4JI7P 4B3RP 4DUYP 2UUBP 4OX9P 4X66P 4JI5P 4B3MP 2ZM6P 5LMUP 4NXNP 4DR6P 1HNXP 4LF7P 4X62P 4X65P 2F4VP 2VQEP 1XMOP 4DR4P 1HNWP 1XNQP 1IBLP 3BN0A 4DR2P 4DV3P 1HNZP 4LF6P 4LFCP 4DV5P 4KHPP 4LF5P 1IBKP 4YY3P 4DR1P 1N33P 4DV2P 4JV5P 2VQFP 4JI1P 1EMWA 4DR5P 4AQYP 4DV0P 4JI2P 4DR3P 2UU9P 4DUZP 3T1HP 4NXMP 2UXBP 5AJ3P 4DV6P 4GKJP 1FJGP 4JI0P 4DV7P 4YHHP 4LF4P 3T1YP 4LF8P 4K0KP 2HHHP 4B3SP 4JYAP 4JI8P 2E5LP 2UXDP 4LFBP 4X64P 1N32P 4GKKP 4LFAP 4DR7P 4DV1P 1N36P 4LF9P 5LMNP 1XMQP 1XNRP 1IBMP 4B3TP 1J5EP 4JI4P 5BR8P 2UXCP 4JI6P 1I94P 1N34P 2UUAP 4JI3P 1HR0P 3OTOP 4DV4P 2UUCP 5IWAP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI7 P;  4B3R P;  4DUY P;  2UUB P;  4OX9 P;  4X66 P;  4JI5 P;  4B3M P;  2ZM6 P;  5LMU P;  4NXN P;  4DR6 P;  1HNX P;  4LF7 P;  4X62 P;  4X65 P;  2F4V P;  2VQE P;  1XMO P;  4DR4 P;  1HNW P;  1XNQ P;  1IBL P;  3BN0 A;  4DR2 P;  4DV3 P;  1HNZ P;  4LF6 P;  4LFC P;  4DV5 P;  4KHP P;  4LF5 P;  1IBK P;  4YY3 P;  4DR1 P;  1N33 P;  4DV2 P;  4JV5 P;  2VQF P;  4JI1 P;  1EMW A;  4DR5 P;  4AQY P;  4DV0 P;  4JI2 P;  4DR3 P;  2UU9 P;  4DUZ P;  3T1H P;  4NXM P;  2UXB P;  5AJ3 P;  4DV6 P;  4GKJ P;  1FJG P;  4JI0 P;  4DV7 P;  4YHH P;  4LF4 P;  3T1Y P;  4LF8 P;  4K0K P;  2HHH P;  4B3S P;  4JYA P;  4JI8 P;  2E5L P;  2UXD P;  4LFB P;  4X64 P;  1N32 P;  4GKK P;  4LFA P;  4DR7 P;  4DV1 P;  1N36 P;  4LF9 P;  5LMN P;  1XMQ P;  1XNR P;  1IBM P;  4B3T P;  1J5E P;  4JI4 P;  5BR8 P;  2UXC P;  4JI6 P;  1I94 P;  1N34 P;  2UUA P;  4JI3 P;  1HR0 P;  3OTO P;  4DV4 P;  2UUC P;  5IWA P; 
#chains in the Genus database with same CATH topology
 4JI7 P;  4B3R P;  4DUY P;  2UUB P;  4OX9 P;  4X66 P;  4JI5 P;  4B3M P;  2ZM6 P;  5LMU P;  4NXN P;  4DR6 P;  1HNX P;  4LF7 P;  4X62 P;  4X65 P;  2F4V P;  2VQE P;  1XMO P;  4DR4 P;  1HNW P;  1XNQ P;  1IBL P;  3BN0 A;  4DR2 P;  4DV3 P;  1HNZ P;  4LF6 P;  4LFC P;  4DV5 P;  4KHP P;  4LF5 P;  1IBK P;  4YY3 P;  4DR1 P;  1N33 P;  4DV2 P;  4JV5 P;  2VQF P;  4JI1 P;  1EMW A;  4DR5 P;  4AQY P;  4DV0 P;  4JI2 P;  4DR3 P;  2UU9 P;  4DUZ P;  3T1H P;  4NXM P;  2UXB P;  5AJ3 P;  4DV6 P;  4GKJ P;  1FJG P;  4JI0 P;  4DV7 P;  4YHH P;  4LF4 P;  3T1Y P;  4LF8 P;  4K0K P;  2HHH P;  4B3S P;  4JYA P;  4JI8 P;  2E5L P;  2UXD P;  4LFB P;  4X64 P;  1N32 P;  4GKK P;  4LFA P;  4DR7 P;  4DV1 P;  1N36 P;  4LF9 P;  5LMN P;  1XMQ P;  1XNR P;  1IBM P;  4B3T P;  1J5E P;  4JI4 P;  5BR8 P;  2UXC P;  4JI6 P;  1I94 P;  1N34 P;  2UUA P;  4JI3 P;  1HR0 P;  3OTO P;  4DV4 P;  2UUC P;  5IWA P; 
#chains in the Genus database with same CATH homology
 4JI7 P;  4B3R P;  4DUY P;  2UUB P;  4OX9 P;  4X66 P;  4JI5 P;  4B3M P;  2ZM6 P;  5LMU P;  4NXN P;  4DR6 P;  1HNX P;  4LF7 P;  4X62 P;  4X65 P;  2F4V P;  2VQE P;  1XMO P;  4DR4 P;  1HNW P;  1XNQ P;  1IBL P;  3BN0 A;  4DR2 P;  4DV3 P;  1HNZ P;  4LF6 P;  4LFC P;  4DV5 P;  4KHP P;  4LF5 P;  1IBK P;  4YY3 P;  4DR1 P;  1N33 P;  4DV2 P;  4JV5 P;  2VQF P;  4JI1 P;  1EMW A;  4DR5 P;  4AQY P;  4DV0 P;  4JI2 P;  4DR3 P;  2UU9 P;  4DUZ P;  3T1H P;  4NXM P;  2UXB P;  5AJ3 P;  4DV6 P;  4GKJ P;  1FJG P;  4JI0 P;  4DV7 P;  4YHH P;  4LF4 P;  3T1Y P;  4LF8 P;  4K0K P;  2HHH P;  4B3S P;  4JYA P;  4JI8 P;  2E5L P;  2UXD P;  4LFB P;  4X64 P;  1N32 P;  4GKK P;  4LFA P;  4DR7 P;  4DV1 P;  1N36 P;  4LF9 P;  5LMN P;  1XMQ P;  1XNR P;  1IBM P;  4B3T P;  1J5E P;  4JI4 P;  5BR8 P;  2UXC P;  4JI6 P;  1I94 P;  1N34 P;  2UUA P;  4JI3 P;  1HR0 P;  3OTO P;  4DV4 P;  2UUC P;  5IWA P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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