1N33P

Structure of the thermus thermophilus 30s ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin
Total Genus 15
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
83
structure length
83
Chain Sequence
MVKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVDVERARYWLSVGAQPTDTARRLLRQAGVFRQE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 16S RIBOSOMAL RNA
publication title Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form
pubmed doi rcsb
total genus 15
structure length 83
sequence length 83
ec nomenclature
pdb deposition date 2002-10-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
P PF00886 Ribosomal_S16 Ribosomal protein S16
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1320.10 Alpha Beta 2-Layer Sandwich S16 Ribosomal Protein; Chain: A; S16 Ribosomal Protein; Chain: A; 1n33P00
4JI5P 4LF6P 2HHHP 4NXNP 4LF5P 4DR7P 2F4VP 4DUYP 1N34P 4X62P 2ZM6P 4NXMP 4LF7P 1IBLP 2UUCP 3BN0A 1N33P 4JYAP 4K0KP 4JI6P 4DR6P 4DV3P 2UUBP 1XMOP 4LFAP 1IBKP 2VQFP 2UXCP 4B3TP 4DR2P 1XNQP 4YHHP 2E5LP 1FJGP 1XNRP 4LF9P 4B3MP 4JI4P 4DV0P 4X65P 4GKKP 4JI7P 2VQEP 4B3RP 2UXBP 4KHPP 4DV7P 3OTOP 1HR0P 4JI0P 4DV4P 1HNZP 4DR1P 1XMQP 4JI8P 4AQYP 1HNWP 4DR3P 1HNXP 4LFCP 1I94P 4LF8P 4OX9P 3T1YP 4LF4P 4DV5P 2UXDP 4X64P 5BR8P 4X66P 4DUZP 3T1HP 4JI2P 5LMNP 4LFBP 1IBMP 1EMWA 1J5EP 4DV2P 2UUAP 4DR5P 4GKJP 4DV1P 5LMUP 4JV5P 4JI3P 1N32P 1N36P 4B3SP 4JI1P 5AJ3P 4DV6P 2UU9P 5IWAP 4YY3P 4DR4P
chains in the Genus database with same CATH superfamily
4JI5P 4LF6P 2HHHP 4NXNP 4LF5P 4DR7P 2F4VP 4DUYP 1N34P 4X62P 2ZM6P 4NXMP 4LF7P 1IBLP 2UUCP 3BN0A 1N33P 4JYAP 4K0KP 4JI6P 4DR6P 4DV3P 2UUBP 1XMOP 4LFAP 1IBKP 2VQFP 2UXCP 4B3TP 4DR2P 1XNQP 4YHHP 2E5LP 1FJGP 1XNRP 4LF9P 4B3MP 4JI4P 4DV0P 4X65P 4GKKP 4JI7P 2VQEP 4B3RP 2UXBP 4KHPP 4DV7P 3OTOP 1HR0P 4JI0P 4DV4P 1HNZP 4DR1P 1XMQP 4JI8P 4AQYP 1HNWP 4DR3P 1HNXP 4LFCP 1I94P 4LF8P 4OX9P 3T1YP 4LF4P 4DV5P 2UXDP 4X64P 5BR8P 4X66P 4DUZP 3T1HP 4JI2P 5LMNP 4LFBP 1IBMP 1EMWA 1J5EP 4DV2P 2UUAP 4DR5P 4GKJP 4DV1P 5LMUP 4JV5P 4JI3P 1N32P 1N36P 4B3SP 4JI1P 5AJ3P 4DV6P 2UU9P 5IWAP 4YY3P 4DR4P
chains in the Genus database with same CATH topology
4JI5P 4LF6P 2HHHP 4NXNP 4LF5P 4DR7P 2F4VP 4DUYP 1N34P 4X62P 2ZM6P 4NXMP 4LF7P 1IBLP 2UUCP 3BN0A 1N33P 4JYAP 4K0KP 4JI6P 4DR6P 4DV3P 2UUBP 1XMOP 4LFAP 1IBKP 2VQFP 2UXCP 4B3TP 4DR2P 1XNQP 4YHHP 2E5LP 1FJGP 1XNRP 4LF9P 4B3MP 4JI4P 4DV0P 4X65P 4GKKP 4JI7P 2VQEP 4B3RP 2UXBP 4KHPP 4DV7P 3OTOP 1HR0P 4JI0P 4DV4P 1HNZP 4DR1P 1XMQP 4JI8P 4AQYP 1HNWP 4DR3P 1HNXP 4LFCP 1I94P 4LF8P 4OX9P 3T1YP 4LF4P 4DV5P 2UXDP 4X64P 5BR8P 4X66P 4DUZP 3T1HP 4JI2P 5LMNP 4LFBP 1IBMP 1EMWA 1J5EP 4DV2P 2UUAP 4DR5P 4GKJP 4DV1P 5LMUP 4JV5P 4JI3P 1N32P 1N36P 4B3SP 4JI1P 5AJ3P 4DV6P 2UU9P 5IWAP 4YY3P 4DR4P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JI5 P;  4LF6 P;  2HHH P;  4NXN P;  4LF5 P;  4DR7 P;  2F4V P;  4DUY P;  1N34 P;  4X62 P;  2ZM6 P;  4NXM P;  4LF7 P;  1IBL P;  2UUC P;  3BN0 A;  1N33 P;  4JYA P;  4K0K P;  4JI6 P;  4DR6 P;  4DV3 P;  2UUB P;  1XMO P;  4LFA P;  1IBK P;  2VQF P;  2UXC P;  4B3T P;  4DR2 P;  1XNQ P;  4YHH P;  2E5L P;  1FJG P;  1XNR P;  4LF9 P;  4B3M P;  4JI4 P;  4DV0 P;  4X65 P;  4GKK P;  4JI7 P;  2VQE P;  4B3R P;  2UXB P;  4KHP P;  4DV7 P;  3OTO P;  1HR0 P;  4JI0 P;  4DV4 P;  1HNZ P;  4DR1 P;  1XMQ P;  4JI8 P;  4AQY P;  1HNW P;  4DR3 P;  1HNX P;  4LFC P;  1I94 P;  4LF8 P;  4OX9 P;  3T1Y P;  4LF4 P;  4DV5 P;  2UXD P;  4X64 P;  5BR8 P;  4X66 P;  4DUZ P;  3T1H P;  4JI2 P;  5LMN P;  4LFB P;  1IBM P;  1EMW A;  1J5E P;  4DV2 P;  2UUA P;  4DR5 P;  4GKJ P;  4DV1 P;  5LMU P;  4JV5 P;  4JI3 P;  1N32 P;  1N36 P;  4B3S P;  4JI1 P;  5AJ3 P;  4DV6 P;  2UU9 P;  5IWA P;  4YY3 P;  4DR4 P; 
#chains in the Genus database with same CATH topology
 4JI5 P;  4LF6 P;  2HHH P;  4NXN P;  4LF5 P;  4DR7 P;  2F4V P;  4DUY P;  1N34 P;  4X62 P;  2ZM6 P;  4NXM P;  4LF7 P;  1IBL P;  2UUC P;  3BN0 A;  1N33 P;  4JYA P;  4K0K P;  4JI6 P;  4DR6 P;  4DV3 P;  2UUB P;  1XMO P;  4LFA P;  1IBK P;  2VQF P;  2UXC P;  4B3T P;  4DR2 P;  1XNQ P;  4YHH P;  2E5L P;  1FJG P;  1XNR P;  4LF9 P;  4B3M P;  4JI4 P;  4DV0 P;  4X65 P;  4GKK P;  4JI7 P;  2VQE P;  4B3R P;  2UXB P;  4KHP P;  4DV7 P;  3OTO P;  1HR0 P;  4JI0 P;  4DV4 P;  1HNZ P;  4DR1 P;  1XMQ P;  4JI8 P;  4AQY P;  1HNW P;  4DR3 P;  1HNX P;  4LFC P;  1I94 P;  4LF8 P;  4OX9 P;  3T1Y P;  4LF4 P;  4DV5 P;  2UXD P;  4X64 P;  5BR8 P;  4X66 P;  4DUZ P;  3T1H P;  4JI2 P;  5LMN P;  4LFB P;  1IBM P;  1EMW A;  1J5E P;  4DV2 P;  2UUA P;  4DR5 P;  4GKJ P;  4DV1 P;  5LMU P;  4JV5 P;  4JI3 P;  1N32 P;  1N36 P;  4B3S P;  4JI1 P;  5AJ3 P;  4DV6 P;  2UU9 P;  5IWA P;  4YY3 P;  4DR4 P; 
#chains in the Genus database with same CATH homology
 4JI5 P;  4LF6 P;  2HHH P;  4NXN P;  4LF5 P;  4DR7 P;  2F4V P;  4DUY P;  1N34 P;  4X62 P;  2ZM6 P;  4NXM P;  4LF7 P;  1IBL P;  2UUC P;  3BN0 A;  1N33 P;  4JYA P;  4K0K P;  4JI6 P;  4DR6 P;  4DV3 P;  2UUB P;  1XMO P;  4LFA P;  1IBK P;  2VQF P;  2UXC P;  4B3T P;  4DR2 P;  1XNQ P;  4YHH P;  2E5L P;  1FJG P;  1XNR P;  4LF9 P;  4B3M P;  4JI4 P;  4DV0 P;  4X65 P;  4GKK P;  4JI7 P;  2VQE P;  4B3R P;  2UXB P;  4KHP P;  4DV7 P;  3OTO P;  1HR0 P;  4JI0 P;  4DV4 P;  1HNZ P;  4DR1 P;  1XMQ P;  4JI8 P;  4AQY P;  1HNW P;  4DR3 P;  1HNX P;  4LFC P;  1I94 P;  4LF8 P;  4OX9 P;  3T1Y P;  4LF4 P;  4DV5 P;  2UXD P;  4X64 P;  5BR8 P;  4X66 P;  4DUZ P;  3T1H P;  4JI2 P;  5LMN P;  4LFB P;  1IBM P;  1EMW A;  1J5E P;  4DV2 P;  2UUA P;  4DR5 P;  4GKJ P;  4DV1 P;  5LMU P;  4JV5 P;  4JI3 P;  1N32 P;  1N36 P;  4B3S P;  4JI1 P;  5AJ3 P;  4DV6 P;  2UU9 P;  5IWA P;  4YY3 P;  4DR4 P; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...