1HTL | Genus

Total Genus 44

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	44
sequence length	185
structure length	185
Chain Sequence	RLYRADSRPPDEIKRSGGLMPRGHNEYFDRGTQMNINLYDHARGTQTGFVRYDDGYVSTSLSLRSAHLAGQSILSGYSTYYIYVIATAPNMFNKNDVLGVYSPHPYEQEVSALGGIPYSQIYGWYRVNFGVIDERLHRNREYRDRYYRNLNIAPAEDGYRLAGFPPDHQAWREEPWIHHAPQGCG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 185 atoms

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185 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Enterotoxin
source organism	Escherichia coli
publication title	Mutation of a buried residue causes loss of activity but no conformational change in the heat-labile enterotoxin of Escherichia coli. pubmed doi rcsb
molecule keywords	HEAT-LABILE ENTEROTOXIN, SUBUNIT B
total genus	44
structure length	185
sequence length	185
ec nomenclature
pdb deposition date	1995-02-15

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.210.10	Alpha Beta	Alpha-Beta Complex	Heat-Labile Enterotoxin; Chain A	Heat-Labile Enterotoxin, subunit A	1htlA00

1TIIA 2VSAA 1S5EA 2CB4A 1LTSA 1LTBA 1LTIA 1LTTA 4K6LG 2VSEA 1PTOA 2A5FB 1BCPA 1HTLA 1LTGA 1S5BA 4Z9CA 1S5FA 1S5DA 2CB6A 1PRTA 2A5DB 2A5GB 1LT4A 1S5CA 1XTCA 1LT3A 1LTAA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1TII A;  2VSA A;  1S5E A;  2CB4 A;  1LTS A;  1LTB A;  1LTI A;  1LTT A;  4K6L G;  2VSE A;  1PTO A;  2A5F B;  1BCP A;  1HTL A;  1LTG A;  1S5B A;  4Z9C A;  1S5F A;  1S5D A;  2CB6 A;  1PRT A;  2A5D B;  2A5G B;  1LT4 A;  1S5C A;  1XTC A;  1LT3 A;  1LTA A; 
#chains in the Genus database with same CATH topology
 1TII A;  2VSA A;  1S5E A;  2CB4 A;  1LTS A;  1LTB A;  1LTI A;  1LTT A;  4K6L G;  2VSE A;  1PTO A;  2A5F B;  1BCP A;  1HTL A;  1LTG A;  1S5B A;  4Z9C A;  1S5F A;  1S5D A;  2CB6 A;  1PRT A;  2A5D B;  2A5G B;  1LT4 A;  1S5C A;  1XTC A;  1LT3 A;  1LTA A; 
#chains in the Genus database with same CATH homology
 1TII A;  2VSA A;  1S5E A;  2CB4 A;  1LTS A;  1LTB A;  1LTI A;  1LTT A;  4K6L G;  2VSE A;  1PTO A;  2A5F B;  1BCP A;  1HTL A;  1LTG A;  1S5B A;  4Z9C A;  1S5F A;  1S5D A;  2CB6 A;  1PRT A;  2A5D B;  2A5G B;  1LT4 A;  1S5C A;  1XTC A;  1LT3 A;  1LTA A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1HTLA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN