1XTCA

Cholera toxin
Total Genus 34
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
34
sequence length
192
structure length
192
Chain Sequence
NDDKLYRADSRPPDEIKQSGGLMPRGQSEYFDRGTQMNINLYDHARGTQTGFVRHDDGYVSTSISLRSAHLVGQTILSGHSTYYLYVLATAPNMFNVNDVLGAYSPHPDEQEVSALGGIPYSQIYGWYRVHFGVLDEQLHRNRGYRDRYYSNLDIAPAADGYGLAGFPPEHRAWREEPWIHHAPPGCGNAPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Toxin
molecule keywords CHOLERA TOXIN
publication title The three-dimensional crystal structure of cholera toxin.
pubmed doi rcsb
total genus 34
structure length 192
sequence length 192
ec nomenclature
pdb deposition date 1996-01-10
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.210.10 Alpha Beta Alpha-Beta Complex Heat-Labile Enterotoxin; Chain A Heat-Labile Enterotoxin, subunit A 1xtcA00
1S5CA 1LT4A 1PRTA 2CB6A 2A5DB 1LTAA 1BCPA 1S5FA 2VSAA 1LTGA 4Z9CA 1TIIA 1S5BA 1XTCA 1LTSA 1LTTA 1HTLA 1S5EA 1PTOA 2A5GB 2VSEA 1S5DA 1LTIA 1LT3A 2A5FB 1LTBA 4K6LG 2CB4A
chains in the Genus database with same CATH superfamily
1S5CA 1LT4A 1PRTA 2CB6A 2A5DB 1LTAA 1BCPA 1S5FA 2VSAA 1LTGA 4Z9CA 1TIIA 1S5BA 1XTCA 1LTSA 1LTTA 1HTLA 1S5EA 1PTOA 2A5GB 2VSEA 1S5DA 1LTIA 1LT3A 2A5FB 1LTBA 4K6LG 2CB4A
chains in the Genus database with same CATH topology
1S5CA 1LT4A 1PRTA 2CB6A 2A5DB 1LTAA 1BCPA 1S5FA 2VSAA 1LTGA 4Z9CA 1TIIA 1S5BA 1XTCA 1LTSA 1LTTA 1HTLA 1S5EA 1PTOA 2A5GB 2VSEA 1S5DA 1LTIA 1LT3A 2A5FB 1LTBA 4K6LG 2CB4A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1S5C A;  1LT4 A;  1PRT A;  2CB6 A;  2A5D B;  1LTA A;  1BCP A;  1S5F A;  2VSA A;  1LTG A;  4Z9C A;  1TII A;  1S5B A;  1XTC A;  1LTS A;  1LTT A;  1HTL A;  1S5E A;  1PTO A;  2A5G B;  2VSE A;  1S5D A;  1LTI A;  1LT3 A;  2A5F B;  1LTB A;  4K6L G;  2CB4 A; 
#chains in the Genus database with same CATH topology
 1S5C A;  1LT4 A;  1PRT A;  2CB6 A;  2A5D B;  1LTA A;  1BCP A;  1S5F A;  2VSA A;  1LTG A;  4Z9C A;  1TII A;  1S5B A;  1XTC A;  1LTS A;  1LTT A;  1HTL A;  1S5E A;  1PTO A;  2A5G B;  2VSE A;  1S5D A;  1LTI A;  1LT3 A;  2A5F B;  1LTB A;  4K6L G;  2CB4 A; 
#chains in the Genus database with same CATH homology
 1S5C A;  1LT4 A;  1PRT A;  2CB6 A;  2A5D B;  1LTA A;  1BCP A;  1S5F A;  2VSA A;  1LTG A;  4Z9C A;  1TII A;  1S5B A;  1XTC A;  1LTS A;  1LTT A;  1HTL A;  1S5E A;  1PTO A;  2A5G B;  2VSE A;  1S5D A;  1LTI A;  1LT3 A;  2A5F B;  1LTB A;  4K6L G;  2CB4 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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