1JIDA

Human srp19 in complex with helix 6 of human srp rna
Total Genus 30
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
114
structure length
114
Chain Sequence
AARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal structure of an early protein-RNA assembly complex of the signal recognition particle.
pubmed doi rcsb
molecule tags Signaling protein/rna
source organism Homo sapiens
molecule keywords HELIX 6 OF HUMAN SRP RNA
total genus 30
structure length 114
sequence length 114
ec nomenclature
pdb deposition date 2001-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 1jidA00
3NDBA 5M73B 3DLUA 2V3CA 3DLVA 1KVVA 1LNGA 4XCOA 1L9AA 1JIDA 1KVNA 3KTVB 4P3EB 3KTWA 1MFQB
chains in the Genus database with same CATH superfamily
3DLUA 3AXTA 2CXIA 4IOHA 5M73B 1B70B 4XCOA 2AMCB 2AKWB 3KTVB 3USHA 4P74A 3KTWA 1MFQB 4P71A 2EJUA 3NDBA 4TVAB 2IY5B 3DLVA 3PCOB 4P73A 1KVVA 2LQ3A 3L4GB 1B7YB 4DDVA 2RHSB 1ND9A 4P75A 3AXSA 1LNGA 1L9AA 2RHQB 1JIDA 4P3EB 4DDWA 2HG7A 1PYSB 2DULA 1JJCB 4DDTA 4P72A 2V3CA 3HFZB 2ALYB 2YTZA 1KVNA 3TEHB 2EJTA 1EIYB 4DDUA
chains in the Genus database with same CATH topology
3NDBA 5M73B 3DLUA 2V3CA 3DLVA 1KVVA 1LNGA 4XCOA 1L9AA 1JIDA 1KVNA 3KTVB 4P3EB 3KTWA 1MFQB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NDB A;  5M73 B;  3DLU A;  2V3C A;  3DLV A;  1KVV A;  1LNG A;  4XCO A;  1L9A A;  1JID A;  1KVN A;  3KTV B;  4P3E B;  3KTW A;  1MFQ B; 
#chains in the Genus database with same CATH topology
 3DLU A;  3AXT A;  2CXI A;  4IOH A;  5M73 B;  1B70 B;  4XCO A;  2AMC B;  2AKW B;  3KTV B;  3USH A;  4P74 A;  3KTW A;  1MFQ B;  4P71 A;  2EJU A;  3NDB A;  4TVA B;  2IY5 B;  3DLV A;  3PCO B;  4P73 A;  1KVV A;  2LQ3 A;  3L4G B;  1B7Y B;  4DDV A;  2RHS B;  1ND9 A;  4P75 A;  3AXS A;  1LNG A;  1L9A A;  2RHQ B;  1JID A;  4P3E B;  4DDW A;  2HG7 A;  1PYS B;  2DUL A;  1JJC B;  4DDT A;  4P72 A;  2V3C A;  3HFZ B;  2ALY B;  2YTZ A;  1KVN A;  3TEH B;  2EJT A;  1EIY B;  4DDU A; 
#chains in the Genus database with same CATH homology
 3NDB A;  5M73 B;  3DLU A;  2V3C A;  3DLV A;  1KVV A;  1LNG A;  4XCO A;  1L9A A;  1JID A;  1KVN A;  3KTV B;  4P3E B;  3KTW A;  1MFQ B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...