1JIDA

Human srp19 in complex with helix 6 of human srp rna
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
114
structure length
114
Chain Sequence
AARSPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an early protein-RNA assembly complex of the signal recognition particle.
pubmed doi rcsb
molecule tags Signaling protein/rna
source organism Homo sapiens
molecule keywords HELIX 6 OF HUMAN SRP RNA
total genus 30
structure length 114
sequence length 114
ec nomenclature
pdb deposition date 2001-07-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 1jidA00
1MFQB 1KVVA 3DLUA 4P3EB 4XCOA 3NDBA 3KTVB 1LNGA 5M73B 1L9AA 3KTWA 2V3CA 1JIDA 1KVNA 3DLVA
chains in the Genus database with same CATH superfamily
2DULA 1MFQB 1PYSB 4P3EB 4XCOA 3HFZB 3KTVB 3NDBA 1LNGA 3USHA 5M73B 4P73A 2EJUA 2AMCB 2RHQB 2CXIA 1KVVA 2YTZA 4TVAB 4IOHA 2EJTA 4DDVA 4P71A 4P74A 3TEHB 2HG7A 2V3CA 1JIDA 3PCOB 4DDTA 2LQ3A 3DLUA 3AXSA 1EIYB 1KVNA 4DDWA 1L9AA 3L4GB 3DLVA 3AXTA 1ND9A 2AKWB 2ALYB 1B7YB 2RHSB 3KTWA 4DDUA 1B70B 4P72A 4P75A 2IY5B 1JJCB
chains in the Genus database with same CATH topology
1MFQB 1KVVA 3DLUA 4P3EB 4XCOA 3NDBA 3KTVB 1LNGA 5M73B 1L9AA 3KTWA 2V3CA 1JIDA 1KVNA 3DLVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MFQ B;  1KVV A;  3DLU A;  4P3E B;  4XCO A;  3NDB A;  3KTV B;  1LNG A;  5M73 B;  1L9A A;  3KTW A;  2V3C A;  1JID A;  1KVN A;  3DLV A; 
#chains in the Genus database with same CATH topology
 2DUL A;  1MFQ B;  1PYS B;  4P3E B;  4XCO A;  3HFZ B;  3KTV B;  3NDB A;  1LNG A;  3USH A;  5M73 B;  4P73 A;  2EJU A;  2AMC B;  2RHQ B;  2CXI A;  1KVV A;  2YTZ A;  4TVA B;  4IOH A;  2EJT A;  4DDV A;  4P71 A;  4P74 A;  3TEH B;  2HG7 A;  2V3C A;  1JID A;  3PCO B;  4DDT A;  2LQ3 A;  3DLU A;  3AXS A;  1EIY B;  1KVN A;  4DDW A;  1L9A A;  3L4G B;  3DLV A;  3AXT A;  1ND9 A;  2AKW B;  2ALY B;  1B7Y B;  2RHS B;  3KTW A;  4DDU A;  1B70 B;  4P72 A;  4P75 A;  2IY5 B;  1JJC B; 
#chains in the Genus database with same CATH homology
 1MFQ B;  1KVV A;  3DLU A;  4P3E B;  4XCO A;  3NDB A;  3KTV B;  1LNG A;  5M73 B;  1L9A A;  3KTW A;  2V3C A;  1JID A;  1KVN A;  3DLV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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