1MVFD

Maze addiction antidote
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
44
structure length
44
Chain Sequence
SSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the intrinsically flexible addiction antidote MazE.
pubmed doi rcsb
molecule tags Immune system
source organism Camelus dromedarius
molecule keywords immunoglobulin heavy chain variable region
total genus 4
structure length 44
sequence length 44
chains with identical sequence E
ec nomenclature
pdb deposition date 2002-09-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF04014 MazE_antitoxin Antidote-toxin recognition MazE, bacterial antitoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.260.10 Mainly Beta Ribbon Pemi-like Protein 1; Chain: D Pemi-like Protein 1; Chain: D 1mvfD00
2FY9A 1YFBA 5ITMA 2GLWA 2RO4A 1YSFA 2W1TA 1MVFD 2W1TB 5ITJA 3TNDB 2RO5A 1UB4C 2RO3A 2K1NA 1Z0RA 2L66A 3O27A
chains in the Genus database with same CATH superfamily
2W1TA 4JDOA 2K1NA 1Z0RA 3O27A 2QA4I 2RO4A 1MVFD 2W1TB 5ITJA 5ITMA 2GLWA 1YSFA 1UB4C 2RO3A 1YFBA 3TNDB 2RO5A 2FY9A 2L66A 4JDMA
chains in the Genus database with same CATH topology
2W1TA 4JDOA 2K1NA 1Z0RA 3O27A 2QA4I 2RO4A 1MVFD 2W1TB 5ITJA 5ITMA 2GLWA 1YSFA 1UB4C 2RO3A 1YFBA 3TNDB 2RO5A 2FY9A 2L66A 4JDMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FY9 A;  1YFB A;  5ITM A;  2GLW A;  2RO4 A;  1YSF A;  2W1T A;  1MVF D;  2W1T B;  5ITJ A;  3TND B;  2RO5 A;  1UB4 C;  2RO3 A;  2K1N A;  1Z0R A;  2L66 A;  3O27 A; 
#chains in the Genus database with same CATH topology
 2W1T A;  4JDO A;  2K1N A;  1Z0R A;  3O27 A;  2QA4 I;  2RO4 A;  1MVF D;  2W1T B;  5ITJ A;  5ITM A;  2GLW A;  1YSF A;  1UB4 C;  2RO3 A;  1YFB A;  3TND B;  2RO5 A;  2FY9 A;  2L66 A;  4JDM A; 
#chains in the Genus database with same CATH homology
 2W1T A;  4JDO A;  2K1N A;  1Z0R A;  3O27 A;  2QA4 I;  2RO4 A;  1MVF D;  2W1T B;  5ITJ A;  5ITM A;  2GLW A;  1YSF A;  1UB4 C;  2RO3 A;  1YFB A;  3TND B;  2RO5 A;  2FY9 A;  2L66 A;  4JDM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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