1O7DA

The structure of the bovine lysosomal a-mannosidase suggests a novel mechanism for low ph activation
Total Genus 93

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
291
structure length
291
Chain Sequence
GYKTCPKVKPDMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVEIAFFSRWWRQQTNATQKIVRELVRQGRLEFANGGWVMNDEATTHYGAIIDQMTLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPPTADLFTSVLPNMYNPPEGLCWDMLCADKPVVEDTRSPEYNAKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENANTWFKNLDKLIQLVNA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV13 (257-260)S1 (64-69)TIV2 (74-77)TI1 (51-54)TI2 (52-55)TI7 (270-273)TIV1 (59-62)O1 (55-358)TI8 (281-284)TIV5 (87-90)TIV7 (90-93)TVIII1 (91-94)TIV6 (89-92)AH2 (97-110)TIV9 (154-157)S3 (148-150)TIV8 (150-153)S2 (116-118)TI3 (111-114)AH4 (133-145)AH5 (165-183)TVIII2 (146-149)AH6 (202-211)TIV10 (159-162)TI4 (160-163)3H1 (185-187)S4 (191-194)TI5 (194-197)S5 (215-218)TIV11 (242-245)AH7 (223-232)TVIII3 (234-237)S6 (236-240)TIV12 (247-250)TVIa1 (246-249)S7 (251-256)TIV14 (259-262)TII1 (264-267)TIV3 (76-79)TIV4 (77-80)AH1 (81-86)AH3 (121-130)AH8 (289-305)TI9 (284-287)Updating...
connected with : NaN
molecule tags Hydrolase
publication title The Structure of Bovine Lysosomal Alpha-Mannosidase Suggests a Novel Mechanism for Low-Ph Activation
pubmed doi rcsb
molecule keywords Lysosomal alpha-mannosidase
total genus 93
structure length 291
sequence length 291
ec nomenclature ec 3.2.1.24: Alpha-mannosidase.
pdb deposition date 2002-10-30
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.20.110.10 Alpha Beta Alpha-Beta Barrel 7-stranded beta/alpha barrel Glycoside hydrolase 38, N terminal domain 1o7dA01
1O7DA 3BUQA 1TQWA 3BLBA 1TQTA 1R34A 1HTYA 1QX1A 1R33A 3DDFA 3DX2A 3N8TA 3CZNA 3P0BA 2F1AA 3BVVA 3BVWA 3LVTA 3DX4A 5KBPA 3EJPA 2F7RA 3EJRA 1PS3A 1QWUA 3EJTA 2F7QA 3EJSA 3BUIA 3BVTA 3EJQA 1TQVA 2OW6A 2B5DX 2F18A 2F1BA 3DX1A 1HXKA 2OW7A 3EJUA 1TQSA 3BVXA 1QWNA 1TQUA 2F7PA 2F7OA 3CV5A 3CZSA 2FYVA 2ALWA 1HWWA 3N98A 3BVUA 3BUDA 3DX3A 3N92A 3BUBA 1UFAA 3BUPA 3D52A 3DDGA 3DX0A 3D4ZA 3D51A 3D50A 3D4YA
chains in the Genus database with same CATH superfamily
1O7DA 3BUQA 1TQWA 3BLBA 1TQTA 3P0BA 1R34A 1HTYA 1QX1A 1K1YA 1R33A 1K1WA 3DDFA 3CZNA 3DX2A 3N8TA 2F1AA 3BVVA 3BVWA 3LVTA 3DX4A 5KBPA 3EJPA 1K1XA 2F7RA 3EJRA 1PS3A 1QWUA 3EJTA 2F7QA 3EJSA 3BUIA 3BVTA 3EJQA 1TQVA 2OW6A 2B5DX 2F18A 2F1BA 3DX1A 1HXKA 2OW7A 3EJUA 1TQSA 3BVXA 1QWNA 1TQUA 2F7PA 2F7OA 3CV5A 3CZSA 2FYVA 1HWWA 2ALWA 3N98A 3BVUA 3BUDA 3DX3A 3N92A 3BUBA 1UFAA 3BUPA 3D52A 3DDGA 3DX0A 3D4ZA 3D51A 3D50A 3D4YA
chains in the Genus database with same CATH topology
1O7DA 3BUQA 1TQWA 3BLBA 1TQTA 1R34A 1HTYA 1QX1A 1R33A 3DDFA 3DX2A 3N8TA 3CZNA 3P0BA 2F1AA 3BVVA 3BVWA 3LVTA 3DX4A 5KBPA 3EJPA 2F7RA 3EJRA 1PS3A 1QWUA 3EJTA 2F7QA 3EJSA 3BUIA 3BVTA 3EJQA 1TQVA 2OW6A 2B5DX 2F18A 2F1BA 3DX1A 1HXKA 2OW7A 3EJUA 1TQSA 3BVXA 1QWNA 1TQUA 2F7PA 2F7OA 3CV5A 3CZSA 2FYVA 2ALWA 1HWWA 3N98A 3BVUA 3BUDA 3DX3A 3N92A 3BUBA 1UFAA 3BUPA 3D52A 3DDGA 3DX0A 3D4ZA 3D51A 3D50A 3D4YA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O7D A;  3BUQ A;  1TQW A;  3BLB A;  1TQT A;  1R34 A;  1HTY A;  1QX1 A;  1R33 A;  3DDF A;  3DX2 A;  3N8T A;  3CZN A;  3P0B A;  2F1A A;  3BVV A;  3BVW A;  3LVT A;  3DX4 A;  5KBP A;  3EJP A;  2F7R A;  3EJR A;  1PS3 A;  1QWU A;  3EJT A;  2F7Q A;  3EJS A;  3BUI A;  3BVT A;  3EJQ A;  1TQV A;  2OW6 A;  2B5D X;  2F18 A;  2F1B A;  3DX1 A;  1HXK A;  2OW7 A;  3EJU A;  1TQS A;  3BVX A;  1QWN A;  1TQU A;  2F7P A;  2F7O A;  3CV5 A;  3CZS A;  2FYV A;  2ALW A;  1HWW A;  3N98 A;  3BVU A;  3BUD A;  3DX3 A;  3N92 A;  3BUB A;  1UFA A;  3BUP A;  3D52 A;  3DDG A;  3DX0 A;  3D4Z A;  3D51 A;  3D50 A;  3D4Y A; 
#chains in the Genus database with same CATH topology
 1O7D A;  3BUQ A;  1TQW A;  3BLB A;  1TQT A;  3P0B A;  1R34 A;  1HTY A;  1QX1 A;  1K1Y A;  1R33 A;  1K1W A;  3DDF A;  3CZN A;  3DX2 A;  3N8T A;  2F1A A;  3BVV A;  3BVW A;  3LVT A;  3DX4 A;  5KBP A;  3EJP A;  1K1X A;  2F7R A;  3EJR A;  1PS3 A;  1QWU A;  3EJT A;  2F7Q A;  3EJS A;  3BUI A;  3BVT A;  3EJQ A;  1TQV A;  2OW6 A;  2B5D X;  2F18 A;  2F1B A;  3DX1 A;  1HXK A;  2OW7 A;  3EJU A;  1TQS A;  3BVX A;  1QWN A;  1TQU A;  2F7P A;  2F7O A;  3CV5 A;  3CZS A;  2FYV A;  1HWW A;  2ALW A;  3N98 A;  3BVU A;  3BUD A;  3DX3 A;  3N92 A;  3BUB A;  1UFA A;  3BUP A;  3D52 A;  3DDG A;  3DX0 A;  3D4Z A;  3D51 A;  3D50 A;  3D4Y A; 
#chains in the Genus database with same CATH homology
 1O7D A;  3BUQ A;  1TQW A;  3BLB A;  1TQT A;  1R34 A;  1HTY A;  1QX1 A;  1R33 A;  3DDF A;  3DX2 A;  3N8T A;  3CZN A;  3P0B A;  2F1A A;  3BVV A;  3BVW A;  3LVT A;  3DX4 A;  5KBP A;  3EJP A;  2F7R A;  3EJR A;  1PS3 A;  1QWU A;  3EJT A;  2F7Q A;  3EJS A;  3BUI A;  3BVT A;  3EJQ A;  1TQV A;  2OW6 A;  2B5D X;  2F18 A;  2F1B A;  3DX1 A;  1HXK A;  2OW7 A;  3EJU A;  1TQS A;  3BVX A;  1QWN A;  1TQU A;  2F7P A;  2F7O A;  3CV5 A;  3CZS A;  2FYV A;  2ALW A;  1HWW A;  3N98 A;  3BVU A;  3BUD A;  3DX3 A;  3N92 A;  3BUB A;  1UFA A;  3BUP A;  3D52 A;  3DDG A;  3DX0 A;  3D4Z A;  3D51 A;  3D50 A;  3D4Y A; 
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similar chains in the pdb database (?% sequence similarity)

 
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