1YSFA

The solution structure of the n-domain of the transcription factor abrb
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
52
structure length
52
Chain Sequence
FMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels.
pubmed doi rcsb
molecule tags Transcription
source organism Bacillus subtilis
molecule keywords Transition state regulatory protein abrB
total genus 3
structure length 52
sequence length 52
chains with identical sequence B
ec nomenclature
pdb deposition date 2005-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04014 MazE_antitoxin Antidote-toxin recognition MazE, bacterial antitoxin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.260.10 Mainly Beta Ribbon Pemi-like Protein 1; Chain: D Pemi-like Protein 1; Chain: D 1ysfA00
2RO3A 2RO4A 2GLWA 2W1TB 2FY9A 2W1TA 2L66A 3TNDB 2RO5A 5ITJA 1MVFD 1Z0RA 5ITMA 2K1NA 3O27A 1YFBA 1YSFA 1UB4C
chains in the Genus database with same CATH superfamily
2W1TA 1Z0RA 2RO3A 2GLWA 3TNDB 1MVFD 2K1NA 5ITMA 2RO4A 2L66A 2RO5A 4JDOA 1YFBA 1UB4C 2QA4I 2W1TB 2FY9A 4JDMA 5ITJA 3O27A 1YSFA
chains in the Genus database with same CATH topology
2W1TA 1Z0RA 2RO3A 2GLWA 3TNDB 1MVFD 2K1NA 5ITMA 2RO4A 2L66A 2RO5A 4JDOA 1YFBA 1UB4C 2QA4I 2W1TB 2FY9A 4JDMA 5ITJA 3O27A 1YSFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RO3 A;  2RO4 A;  2GLW A;  2W1T B;  2FY9 A;  2W1T A;  2L66 A;  3TND B;  2RO5 A;  5ITJ A;  1MVF D;  1Z0R A;  5ITM A;  2K1N A;  3O27 A;  1YFB A;  1YSF A;  1UB4 C; 
#chains in the Genus database with same CATH topology
 2W1T A;  1Z0R A;  2RO3 A;  2GLW A;  3TND B;  1MVF D;  2K1N A;  5ITM A;  2RO4 A;  2L66 A;  2RO5 A;  4JDO A;  1YFB A;  1UB4 C;  2QA4 I;  2W1T B;  2FY9 A;  4JDM A;  5ITJ A;  3O27 A;  1YSF A; 
#chains in the Genus database with same CATH homology
 2W1T A;  1Z0R A;  2RO3 A;  2GLW A;  3TND B;  1MVF D;  2K1N A;  5ITM A;  2RO4 A;  2L66 A;  2RO5 A;  4JDO A;  1YFB A;  1UB4 C;  2QA4 I;  2W1T B;  2FY9 A;  4JDM A;  5ITJ A;  3O27 A;  1YSF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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