1BP1A

Crystal structure of bpi, the human bactericidal permeability-increasing protein
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
456
structure length
456
Chain Sequence
VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Bactericidal
molecule keywords BACTERICIDAL/PERMEABILITY-INCREASING PROTEIN
publication title Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution.
pubmed doi rcsb
source organism Homo sapiens
total genus 107
structure length 456
sequence length 456
ec nomenclature
pdb deposition date 1997-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01273 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
A PF02886 LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 1bp1A01
3.15.20.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 2 Bactericidal permeability-increasing protein; domain 2 1bp1A02
1EWFA 5I7LA 3ZPMA 4EWSA 4KGHA 4KGOA 5I7JA 1BP1A 2OBDA 4F2AA 5I7KA 4M4DA
chains in the Genus database with same CATH superfamily
4EWSA 3H4ZA 3N72A 3L6IA 1EWFA 3ZPMA 3AOSA 4KGOA 5I7JA 1BP1A 3A1ZA 5I7KA 4M4DA 2RQFA 4KGHA 3E8TA 4F2AA 5I7LA 1USUB 1USVB 3UV1A 2OBDA 3AOTA 4G0SA 2RCKA 3E8WA
chains in the Genus database with same CATH topology
4EWSA 3H4ZA 3N72A 3L6IA 1EWFA 3ZPMA 3AOSA 4KGOA 5I7JA 1BP1A 3A1ZA 5I7KA 4M4DA 2RQFA 4KGHA 3E8TA 4F2AA 5I7LA 1USUB 1USVB 3UV1A 2OBDA 3AOTA 4G0SA 2RCKA 3E8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EWF A;  5I7L A;  3ZPM A;  4EWS A;  4KGH A;  4KGO A;  5I7J A;  1BP1 A;  2OBD A;  4F2A A;  5I7K A;  4M4D A; 
#chains in the Genus database with same CATH topology
 4EWS A;  3H4Z A;  3N72 A;  3L6I A;  1EWF A;  3ZPM A;  3AOS A;  4KGO A;  5I7J A;  1BP1 A;  3A1Z A;  5I7K A;  4M4D A;  2RQF A;  4KGH A;  3E8T A;  4F2A A;  5I7L A;  1USU B;  1USV B;  3UV1 A;  2OBD A;  3AOT A;  4G0S A;  2RCK A;  3E8W A; 
#chains in the Genus database with same CATH homology
 4EWS A;  3H4Z A;  3N72 A;  3L6I A;  1EWF A;  3ZPM A;  3AOS A;  4KGO A;  5I7J A;  1BP1 A;  3A1Z A;  5I7K A;  4M4D A;  2RQF A;  4KGH A;  3E8T A;  4F2A A;  5I7L A;  1USU B;  1USV B;  3UV1 A;  2OBD A;  3AOT A;  4G0S A;  2RCK A;  3E8W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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