1BP1A

Crystal structure of bpi, the human bactericidal permeability-increasing protein
Total Genus 107
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
107
sequence length
456
structure length
456
Chain Sequence
b'VNPGVVVRISQKGLDYASQQGTAALQKELKRIKIPDYSDSFKIKHLGKGHYSFYSMDIREFQLPSSQISMVPNVGLKFSISNANIKISGKWKAQKRFLKMSGNFDLSIEGMSISADLKLGSNPTSGKPTITCSSCSSHINSVHVHISKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSKLQPYFQTLPVMTKIDSVAGINYGLVAPPATTAETLDVQMKGEFYSENHHNPPPFAPPVMEFPAAHDRMVYLGLSDYFFNTAGLVYQEAGVLKMTLRDDMIPKESKFRLTTKFFGTFLPEVAKKFPNMKIQIHVSASTPPHLSVQPTGLTFYPAVDVQAFAVLPNSALASLFLIGMHTTGSMEVSAESNRLVGELKLDRLLLELKHSNIGPFPVELLQDIMNYIVPILVLPRVNEKLQKGFPLPTPARVQLYNVVLQPHQNFLLFGADVVYK'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BACTERICIDAL/PERMEABILITY-INCREASING PROTEIN
publication title Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Bactericidal
total genus 107
structure length 456
sequence length 456
ec nomenclature
pdb deposition date 1997-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01273 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
A PF02886 LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 1bp1A01
3.15.20.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 2 Bactericidal permeability-increasing protein; domain 2 1bp1A02
4EWSA 5I7KA 2OBDA 4F2AA 1BP1A 5I7LA 5I7JA 4KGOA 3ZPMA 4M4DA 4KGHA 1EWFA
chains in the Genus database with same CATH superfamily
4EWSA 5I7KA 3AOTA 2RQFA 3UV1A 1EWFA 2RCKA 1BP1A 3AOSA 3A1ZA 1USVB 1USUB 3N72A 4KGOA 3E8WA 3ZPMA 5I7JA 5I7LA 3H4ZA 3E8TA 3L6IA 4KGHA 2OBDA 4F2AA 4G0SA 4M4DA
chains in the Genus database with same CATH topology
4EWSA 5I7KA 3AOTA 2RQFA 3UV1A 1EWFA 2RCKA 1BP1A 3AOSA 3A1ZA 1USVB 1USUB 3N72A 4KGOA 3E8WA 3ZPMA 5I7JA 5I7LA 3H4ZA 3E8TA 3L6IA 4KGHA 2OBDA 4F2AA 4G0SA 4M4DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4EWS A;  5I7K A;  2OBD A;  4F2A A;  1BP1 A;  5I7L A;  5I7J A;  4KGO A;  3ZPM A;  4M4D A;  4KGH A;  1EWF A; 
#chains in the Genus database with same CATH topology
 4EWS A;  5I7K A;  3AOT A;  2RQF A;  3UV1 A;  1EWF A;  2RCK A;  1BP1 A;  3AOS A;  3A1Z A;  1USV B;  1USU B;  3N72 A;  4KGO A;  3E8W A;  3ZPM A;  5I7J A;  5I7L A;  3H4Z A;  3E8T A;  3L6I A;  4KGH A;  2OBD A;  4F2A A;  4G0S A;  4M4D A; 
#chains in the Genus database with same CATH homology
 4EWS A;  5I7K A;  3AOT A;  2RQF A;  3UV1 A;  1EWF A;  2RCK A;  1BP1 A;  3AOS A;  3A1Z A;  1USV B;  1USU B;  3N72 A;  4KGO A;  3E8W A;  3ZPM A;  5I7J A;  5I7L A;  3H4Z A;  3E8T A;  3L6I A;  4KGH A;  2OBD A;  4F2A A;  4G0S A;  4M4D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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