The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
38
|
sequence length |
171
|
structure length |
171
|
Chain Sequence |
HHSHMNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Structure genomics, unknown function
|
| molecule keywords |
Uncharacterized lipoprotein yceB
|
| publication title |
Crystal structure of the uncharacterized lipoprotein yceb from e. coli at the resolution 2.0a. northeast structural genomics consortium target er542
rcsb |
| source organism |
Escherichia coli
|
| total genus |
38
|
| structure length |
171
|
| sequence length |
171
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-12-23 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07273 | DUF1439 | Protein of unknown function (DUF1439) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Super Roll | Bactericidal permeability-increasing protein; domain 1 | Bactericidal permeability-increasing protein; domain 1 |
#chains in the Genus database with same CATH superfamily 3L6I A; #chains in the Genus database with same CATH topology 2RCK A; 3L6I A; 4KGO A; 3UV1 A; 4M4D A; 3H4Z A; 3AOT A; 3ZPM A; 3AOS A; 5I7K A; 4KGH A; 5I7L A; 5I7J A; 2RQF A; 3E8W A; 1EWF A; 4G0S A; 4F2A A; 4EWS A; 3N72 A; 1BP1 A; 1USU B; 2OBD A; 1USV B; 3E8T A; 3A1Z A; #chains in the Genus database with same CATH homology 2RCK A; 3L6I A; 4KGO A; 3UV1 A; 4M4D A; 3H4Z A; 3AOT A; 3ZPM A; 3AOS A; 5I7K A; 4KGH A; 5I7L A; 5I7J A; 2RQF A; 3E8W A; 1EWF A; 4G0S A; 4F2A A; 4EWS A; 3N72 A; 1BP1 A; 1USU B; 2OBD A; 1USV B; 3E8T A; 3A1Z A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
