1USU | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	142
structure length	132
Chain Sequence	VDKNCIGWAKEYFKQKIVGVEAKKYAKIKSVSSIEGDCEVNQRGKVISLFDLKITVLIEGHVDSALPFEGSINVPEVAFDSEASSYQFDISIFKETSELSEAKPLIRSELLPKLRQIFQQFGKDLLATHGND

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cfc3587e34c94b25220d562/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cfc3587e34c94b25220d562/pdb.gz): 1411 ms

reading 132 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

132 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 19 ms

Adding embedded #jmolscript: select ({0:131});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Chaperone
source organism	Saccharomyces cerevisiae
publication title	Structural Basis for Recruitment of the ATPase Activator Aha1 to the Hsp90 Chaperone Machinery. pubmed doi rcsb
molecule keywords	HEAT SHOCK PROTEIN HSP82
total genus	33
structure length	132
sequence length	142
ec nomenclature
pdb deposition date	2003-12-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF09229	Aha1_N	Activator of Hsp90 ATPase, N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.15.10.20	Alpha Beta	Super Roll	Bactericidal permeability-increasing protein; domain 1	Bactericidal permeability-increasing protein; domain 1	1usuB00

1USVB 1USUB 3N72A
chains in the Genus database with same CATH superfamily

3N72A 1BP1A 3L6IA 2RCKA 4M4DA 3E8TA 3AOTA 3H4ZA 1EWFA 3E8WA 3A1ZA 4KGHA 5I7JA 4G0SA 5I7LA 3UV1A 3ZPMA 2RQFA 1USVB 1USUB 2OBDA 3AOSA 4KGOA 4EWSA 4F2AA 5I7KA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1USV B;  1USU B;  3N72 A; 
#chains in the Genus database with same CATH topology
 3N72 A;  1BP1 A;  3L6I A;  2RCK A;  4M4D A;  3E8T A;  3AOT A;  3H4Z A;  1EWF A;  3E8W A;  3A1Z A;  4KGH A;  5I7J A;  4G0S A;  5I7L A;  3UV1 A;  3ZPM A;  2RQF A;  1USV B;  1USU B;  2OBD A;  3AOS A;  4KGO A;  4EWS A;  4F2A A;  5I7K A; 
#chains in the Genus database with same CATH homology
 3N72 A;  1BP1 A;  3L6I A;  2RCK A;  4M4D A;  3E8T A;  3AOT A;  3H4Z A;  1EWF A;  3E8W A;  3A1Z A;  4KGH A;  5I7J A;  4G0S A;  5I7L A;  3UV1 A;  3ZPM A;  2RQF A;  1USV B;  1USU B;  2OBD A;  3AOS A;  4KGO A;  4EWS A;  4F2A A;  5I7K A;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1USUB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations