The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
202
|
sequence length |
528
|
structure length |
518
|
Chain Sequence |
MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEKLIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPESSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHARDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADSSWGATNDWIYRHLHEMIERMIDLSKKYYNSSDPLVERVLNQMLRELFLAQSSDWAFIMTTRTSVQYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWTDAIFPEINFRVMARDVI
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the novel alpha-amylase AmyC from Thermotoga maritima.
pubmed doi rcsb |
| molecule keywords |
alpha-Amylase
|
| molecule tags |
Hydrolase
|
| source organism |
Thermotoga maritima
|
| total genus |
202
|
| structure length |
518
|
| sequence length |
528
|
| ec nomenclature |
ec
3.2.1.1: Alpha-amylase. |
| pdb deposition date | 2005-09-28 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | immunoglobulin/albumin-binding domain-like | Families 57/38 glycoside transferase, middle domain | ||
| Alpha Beta | Alpha-Beta Barrel | 7-stranded beta/alpha barrel | Glycoside hydrolase 38, N terminal domain |
#chains in the Genus database with same CATH superfamily 5KBP A; 3BVX A; 3EJQ A; 3D51 A; 3DX0 A; 1TQT A; 3BVU A; 2OW6 A; 2F7R A; 1TQW A; 2F1B A; 3BUB A; 3DX1 A; 2OW7 A; 3EJP A; 1HTY A; 2F7P A; 1O7D A; 1QWN A; 1HWW A; 2FYV A; 3BUD A; 3BVT A; 2ALW A; 2F18 A; 3BLB A; 1R34 A; 3BUQ A; 1R33 A; 3BVV A; 1PS3 A; 3D52 A; 2B5D X; 3P0B A; 3DDG A; 3EJT A; 3N92 A; 1TQS A; 3CV5 A; 3LVT A; 2F7Q A; 1TQV A; 1QX1 A; 1UFA A; 1QWU A; 1HXK A; 3BVW A; 3DX2 A; 3D4Y A; 3EJR A; 2F7O A; 3N8T A; 3D4Z A; 3DX4 A; 3D50 A; 3EJU A; 3N98 A; 3DX3 A; 1TQU A; 2F1A A; 3DDF A; 3BUP A; 3BUI A; 3CZN A; 3EJS A; 3CZS A; #chains in the Genus database with same CATH topology 5KBP A; 3D51 A; 1TQT A; 2OW6 A; 2Q5I A; 1HTY A; 2F7P A; 1QWN A; 3BVT A; 2PMF A; 3D52 A; 3N92 A; 2F7Q A; 2ZT5 A; 2F7O A; 3DX3 A; 3BUP A; 3BUI A; 2ZT7 A; 3BVX A; 3EJQ A; 3BVU A; 2F1B A; 3EJP A; 2FYV A; 1K1X A; 3EJT A; 3BVV A; 1PS3 A; 2Q5H A; 3DDG A; 2ZT8 A; 3CV5 A; 3LVT A; 1QX1 A; 1K1Y A; 2PME A; 1UFA A; 1HXK A; 3BVW A; 2ZXF A; 3EJU A; 3N98 A; 1TQU A; 3DX0 A; 2F7R A; 3BUB A; 1O7D A; 1HWW A; 3BUD A; 3BLB A; 1TQS A; 1TQV A; 3EJR A; 3D4Z A; 3N8T A; 3EJS A; 1TQW A; 3DX1 A; 2OW7 A; 1K1W A; 2ALW A; 2F18 A; 1R34 A; 3BUQ A; 1R33 A; 2B5D X; 3P0B A; 1QWU A; 3DX2 A; 3D4Y A; 2ZT6 A; 4KQE A; 3DX4 A; 3D50 A; 2F1A A; 3DDF A; 3CZN A; 3CZS A; #chains in the Genus database with same CATH homology 5KBP A; 3BVX A; 3EJQ A; 3D51 A; 3DX0 A; 1TQT A; 3BVU A; 2OW6 A; 2F7R A; 1TQW A; 2F1B A; 3BUB A; 3DX1 A; 2OW7 A; 3EJP A; 1HTY A; 2F7P A; 1O7D A; 1QWN A; 1HWW A; 2FYV A; 3BUD A; 3BVT A; 2ALW A; 2F18 A; 3BLB A; 1R34 A; 3BUQ A; 1R33 A; 3BVV A; 1PS3 A; 3D52 A; 2B5D X; 3P0B A; 3DDG A; 3EJT A; 3N92 A; 1TQS A; 3CV5 A; 3LVT A; 2F7Q A; 1TQV A; 1QX1 A; 1UFA A; 1QWU A; 1HXK A; 3BVW A; 3DX2 A; 3D4Y A; 3EJR A; 2F7O A; 3N8T A; 3D4Z A; 3DX4 A; 3D50 A; 3EJU A; 3N98 A; 3DX3 A; 1TQU A; 2F1A A; 3DDF A; 3BUP A; 3BUI A; 3CZN A; 3EJS A; 3CZS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
