2B5DX

Crystal structure of the novel alpha-amylase amyc from thermotoga maritima
Total Genus 202

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
202
sequence length
528
structure length
518
Chain Sequence
MRGKILIFLHAHLPYVHHPEYDHFLEERWLFEAITETYIPLLMMFDEIEDFRLTMSITPPLMEMLSSRDLQEKYERHMEKLIELANKEVERTKKEHPLKHKMAKFYREHFEKILNVFRSYDGNILEGFKKYQETGKLEIVTCNATHAFLPLYQMYPEVVNAQITVGVKNYEKHMKKHPRGIWLAECGYYQGLDLYLAQNNVEYFFVDSHAFWFADEQPRYGVYRPIMTPSGVFAFARDPESSEQVWSAAVGYPGDPRYREFYRDIGFDREMEYIKDYIDPSGVRINTGIKYHRITSKSLDASQKEYYDIDLAMEAVEEHARDFLHKKESQARRLMDIMGVEPVIVAPFDAELFGHWWFEGVFFLKRFFELVNESKDLKLVTASEVIDTLEEVQIATPADSSWGATNDWIYRHLHEMIERMIDLSKKYYNSSDPLVERVLNQMLRELFLAQSSDWAFIMTTRTSVQYAENRTKLHIKRFLNLYDQLVSGRIDEEMLRYYEWTDAIFPEINFRVMARDVI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTI13 (374-377)S1 (3-11)TI2 (143-146)3H9 (350-352)TI1 (18-21)AH1 (25-47)TIV6 (464-467)TVIII1 (21-24)AH3 (68-93)TIV3 (352-355)S2 (53-57)TVIII2 (135-138)AH11 (382-387)3H7 (271-273)AH4 (97-120)AH9 (309-338)AH5 (124-134)TI'1 (120-123)AH6 (156-174)S3 (137-142)S5 (203-206)3H2 (184-186)3H1 (149-151)TI3 (152-155)AH13 (443-459)AH7 (192-199)TIV8 (513-516)AH15 (502-511)S4 (180-182)TI6 (228-231)S7 (232-236)AH8 (208-213)TVIII3 (214-217)TI4 (218-221)TII'1 (220-223)S8 (343-349)TI5 (221-224)TVIII6 (389-392)3H4 (243-246)TI7 (247-250)3H5 (252-254)TI8 (248-251)TI9 (255-258)TI10 (260-263)3H8 (301-303)TI11 (274-277)TI12 (279-282)O1 (294-296)TVIII4 (298-301)AH10 (359-373)TIV4 (353-356)TIV5 (354-357)AH12 (418-437)TI14 (437-440)AH14 (472-496)S9 (377-379)AH2 (59-66)TII1 (189-192)S6 (226-228)3H3 (239-241)TIV7 (469-472)3H6 (265-267)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Thermotoga maritima
publication title Structure of the novel alpha-amylase AmyC from Thermotoga maritima.
pubmed doi rcsb
molecule keywords alpha-Amylase
total genus 202
structure length 518
sequence length 528
ec nomenclature ec 3.2.1.1: Alpha-amylase.
pdb deposition date 2005-09-28
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1430.10 Mainly Alpha Up-down Bundle immunoglobulin/albumin-binding domain-like Families 57/38 glycoside transferase, middle domain 2b5dX02
3.20.110.10 Alpha Beta Alpha-Beta Barrel 7-stranded beta/alpha barrel Glycoside hydrolase 38, N terminal domain 2b5dX01
3BUBA 3DDGA 3DX1A 3BVXA 1R33A 3BVWA 3DX4A 1HXKA 3DX2A 1PS3A 3D4YA 1QWNA 1O7DA 3BUIA 3DX0A 3EJTA 1TQUA 1TQVA 1HTYA 2OW6A 3DX3A 3CV5A 3BUDA 2F7QA 1QWUA 2F7PA 3BUPA 3N92A 3BLBA 2F18A 5KBPA 1HWWA 3EJPA 3LVTA 2F1BA 2FYVA 2F1AA 3BVTA 1R34A 2ALWA 3CZSA 3D52A 3BVUA 1TQWA 2F7OA 1QX1A 3DDFA 3EJSA 3EJQA 3D51A 1TQTA 3D4ZA 3CZNA 3BUQA 3BVVA 3EJRA 3P0BA 1UFAA 3N98A 2B5DX 1TQSA 2F7RA 2OW7A 3EJUA 3N8TA 3D50A
chains in the Genus database with same CATH superfamily
3BUBA 3DX1A 1R33A 3DX2A 3D4YA 3EJTA 1K1WA 3CV5A 3DX3A 2F7QA 1K1XA 2Q5HA 2F18A 2PMEA 3EJPA 3BVTA 1R34A 2ALWA 1TQWA 1QX1A 1TQTA 2ZT5A 4KQEA 3BUQA 2OW7A 3N8TA 3DDGA 2ZT6A 2ZT8A 3BVXA 1HXKA 1PS3A 2F7PA 5KBPA 3CZSA 3BVUA 2F7OA 3EJSA 2B5DX 3D50A 3BVWA 2PMFA 1O7DA 3DX0A 1TQUA 1HTYA 1QWUA 1K1YA 1HWWA 3LVTA 2FYVA 3EJQA 3D51A 3D4ZA 3N98A 1TQSA 2F7RA 3D52A 3EJUA 3DX4A 1QWNA 3BUIA 2ZT7A 1TQVA 2Q5IA 2OW6A 3BUDA 2ZXFA 3BUPA 3N92A 3BLBA 2F1BA 2F1AA 3DDFA 3BVVA 3EJRA 3P0BA 1UFAA 3CZNA
chains in the Genus database with same CATH topology
3BUBA 3DDGA 3DX1A 3BVXA 1R33A 3BVWA 3DX4A 1HXKA 3DX2A 1PS3A 3D4YA 1QWNA 1O7DA 3BUIA 3DX0A 3EJTA 1TQUA 1TQVA 1HTYA 2OW6A 3DX3A 3CV5A 3BUDA 2F7QA 1QWUA 2F7PA 3BUPA 3N92A 3BLBA 2F18A 5KBPA 1HWWA 3EJPA 3LVTA 2F1BA 2FYVA 2F1AA 3BVTA 1R34A 2ALWA 3CZSA 3D52A 3BVUA 1TQWA 2F7OA 1QX1A 3DDFA 3EJSA 3EJQA 3D51A 1TQTA 3D4ZA 3CZNA 3BUQA 3BVVA 3EJRA 3P0BA 1UFAA 3N98A 2B5DX 1TQSA 2F7RA 2OW7A 3EJUA 3N8TA 3D50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3BUB A;  3DDG A;  3DX1 A;  3BVX A;  1R33 A;  3BVW A;  3DX4 A;  1HXK A;  3DX2 A;  1PS3 A;  3D4Y A;  1QWN A;  1O7D A;  3BUI A;  3DX0 A;  3EJT A;  1TQU A;  1TQV A;  1HTY A;  2OW6 A;  3DX3 A;  3CV5 A;  3BUD A;  2F7Q A;  1QWU A;  2F7P A;  3BUP A;  3N92 A;  3BLB A;  2F18 A;  5KBP A;  1HWW A;  3EJP A;  3LVT A;  2F1B A;  2FYV A;  2F1A A;  3BVT A;  1R34 A;  2ALW A;  3CZS A;  3D52 A;  3BVU A;  1TQW A;  2F7O A;  1QX1 A;  3DDF A;  3EJS A;  3EJQ A;  3D51 A;  1TQT A;  3D4Z A;  3CZN A;  3BUQ A;  3BVV A;  3EJR A;  3P0B A;  1UFA A;  3N98 A;  2B5D X;  1TQS A;  2F7R A;  2OW7 A;  3EJU A;  3N8T A;  3D50 A; 
#chains in the Genus database with same CATH topology
 3BUB A;  3DX1 A;  1R33 A;  3DX2 A;  3D4Y A;  3EJT A;  1K1W A;  3CV5 A;  3DX3 A;  2F7Q A;  1K1X A;  2Q5H A;  2F18 A;  2PME A;  3EJP A;  3BVT A;  1R34 A;  2ALW A;  1TQW A;  1QX1 A;  1TQT A;  2ZT5 A;  4KQE A;  3BUQ A;  2OW7 A;  3N8T A;  3DDG A;  2ZT6 A;  2ZT8 A;  3BVX A;  1HXK A;  1PS3 A;  2F7P A;  5KBP A;  3CZS A;  3BVU A;  2F7O A;  3EJS A;  2B5D X;  3D50 A;  3BVW A;  2PMF A;  1O7D A;  3DX0 A;  1TQU A;  1HTY A;  1QWU A;  1K1Y A;  1HWW A;  3LVT A;  2FYV A;  3EJQ A;  3D51 A;  3D4Z A;  3N98 A;  1TQS A;  2F7R A;  3D52 A;  3EJU A;  3DX4 A;  1QWN A;  3BUI A;  2ZT7 A;  1TQV A;  2Q5I A;  2OW6 A;  3BUD A;  2ZXF A;  3BUP A;  3N92 A;  3BLB A;  2F1B A;  2F1A A;  3DDF A;  3BVV A;  3EJR A;  3P0B A;  1UFA A;  3CZN A; 
#chains in the Genus database with same CATH homology
 3BUB A;  3DDG A;  3DX1 A;  3BVX A;  1R33 A;  3BVW A;  3DX4 A;  1HXK A;  3DX2 A;  1PS3 A;  3D4Y A;  1QWN A;  1O7D A;  3BUI A;  3DX0 A;  3EJT A;  1TQU A;  1TQV A;  1HTY A;  2OW6 A;  3DX3 A;  3CV5 A;  3BUD A;  2F7Q A;  1QWU A;  2F7P A;  3BUP A;  3N92 A;  3BLB A;  2F18 A;  5KBP A;  1HWW A;  3EJP A;  3LVT A;  2F1B A;  2FYV A;  2F1A A;  3BVT A;  1R34 A;  2ALW A;  3CZS A;  3D52 A;  3BVU A;  1TQW A;  2F7O A;  1QX1 A;  3DDF A;  3EJS A;  3EJQ A;  3D51 A;  1TQT A;  3D4Z A;  3CZN A;  3BUQ A;  3BVV A;  3EJR A;  3P0B A;  1UFA A;  3N98 A;  2B5D X;  1TQS A;  2F7R A;  2OW7 A;  3EJU A;  3N8T A;  3D50 A; 
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