2PKHA

Structural genomics, the crystal structure of the c-terminal domain of histidine utilization repressor from pseudomonas syringae pv. tomato str. dc3000
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
141
structure length
141
Chain Sequence
RHTCKVMVLKEEAAGSERALALDMREGQRVFHSLIVHFENDIPVQIEDRFVNAQVAPDYLKQDFTLQTPYAYLSQVAPLTEGEHVVEAILAEADECKLLQIDAGEPCLLIRRRTWSGRQPVTAARLIHPGSRHRLEGRFTK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of the C-terminal domain of histidine utilization repressor from Pseudomonas syringae pv. tomato str. DC3000.
rcsb
molecule tags Dna binding protein
source organism Pseudomonas syringae pv. tomato
molecule keywords Histidine utilization repressor
total genus 30
structure length 141
sequence length 141
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2007-04-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07702 UTRA UTRA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1410.10 Alpha Beta 3-Layer(aba) Sandwich Chorismate lyase Chorismate lyase-like 2pkhA01
1JD3A 3CNVA 4ZSIA 1G1BA 2FA1A 2PKHA 1TT8A 2WV0A 3F8MA 1G81A 3F8LA 2IKKA 2AHCA 4ZSBA 3EDPA 4U0WA 2RA5A 3LHEA 4ZSKA 3DDVA 1XLRA 2OGGA 2P19A 4U0VA 3BWGA 3HFIA 3EETA 4WWCA 3L5ZA 1FW9A 2NWIA 2OOIA
chains in the Genus database with same CATH superfamily
1JD3A 3CNVA 4ZSIA 1G1BA 2FA1A 2PKHA 1TT8A 2WV0A 3F8MA 1G81A 3F8LA 2IKKA 2AHCA 4ZSBA 3EDPA 4U0WA 2RA5A 3LHEA 4ZSKA 3DDVA 1XLRA 2OGGA 2P19A 4U0VA 3BWGA 3HFIA 3EETA 4WWCA 3L5ZA 1FW9A 2NWIA 2OOIA
chains in the Genus database with same CATH topology
1JD3A 3CNVA 4ZSIA 1G1BA 2FA1A 2PKHA 1TT8A 2WV0A 3F8MA 1G81A 3F8LA 2IKKA 2AHCA 4ZSBA 3EDPA 4U0WA 2RA5A 3LHEA 4ZSKA 3DDVA 1XLRA 2OGGA 2P19A 4U0VA 3BWGA 3HFIA 3EETA 4WWCA 3L5ZA 1FW9A 2NWIA 2OOIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JD3 A;  3CNV A;  4ZSI A;  1G1B A;  2FA1 A;  2PKH A;  1TT8 A;  2WV0 A;  3F8M A;  1G81 A;  3F8L A;  2IKK A;  2AHC A;  4ZSB A;  3EDP A;  4U0W A;  2RA5 A;  3LHE A;  4ZSK A;  3DDV A;  1XLR A;  2OGG A;  2P19 A;  4U0V A;  3BWG A;  3HFI A;  3EET A;  4WWC A;  3L5Z A;  1FW9 A;  2NWI A;  2OOI A; 
#chains in the Genus database with same CATH topology
 1JD3 A;  3CNV A;  4ZSI A;  1G1B A;  2FA1 A;  2PKH A;  1TT8 A;  2WV0 A;  3F8M A;  1G81 A;  3F8L A;  2IKK A;  2AHC A;  4ZSB A;  3EDP A;  4U0W A;  2RA5 A;  3LHE A;  4ZSK A;  3DDV A;  1XLR A;  2OGG A;  2P19 A;  4U0V A;  3BWG A;  3HFI A;  3EET A;  4WWC A;  3L5Z A;  1FW9 A;  2NWI A;  2OOI A; 
#chains in the Genus database with same CATH homology
 1JD3 A;  3CNV A;  4ZSI A;  1G1B A;  2FA1 A;  2PKH A;  1TT8 A;  2WV0 A;  3F8M A;  1G81 A;  3F8L A;  2IKK A;  2AHC A;  4ZSB A;  3EDP A;  4U0W A;  2RA5 A;  3LHE A;  4ZSK A;  3DDV A;  1XLR A;  2OGG A;  2P19 A;  4U0V A;  3BWG A;  3HFI A;  3EET A;  4WWC A;  3L5Z A;  1FW9 A;  2NWI A;  2OOI A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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