2RO4 | Genus

Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	5
sequence length	53
structure length	53
Chain Sequence	MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Insights into the nature of DNA binding of AbrB-like transcription factors pubmed doi rcsb
molecule keywords	Transition state regulatory protein abrB
molecule tags	Transcription
source organism	Bacillus subtilis
total genus	5
structure length	53
sequence length	53
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-03-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF04014	MazE_antitoxin	Antidote-toxin recognition MazE, bacterial antitoxin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.10.260.10	Mainly Beta	Ribbon	Pemi-like Protein 1; Chain: D	Pemi-like Protein 1; Chain: D	2ro4A00

2W1TB 2RO4A 2FY9A 1UB4C 2RO5A 1Z0RA 1YFBA 3O27A 5ITJA 3TNDB 2GLWA 1MVFD 1YSFA 2RO3A 5ITMA 2W1TA 2K1NA 2L66A
chains in the Genus database with same CATH superfamily

2FY9A 2RO5A 4JDMA 5ITJA 3O27A 1MVFD 2W1TA 2QA4I 2L66A 1UB4C 1Z0RA 2K1NA 2W1TB 1YSFA 2RO3A 5ITMA 2RO4A 1YFBA 4JDOA 3TNDB 2GLWA
chains in the Genus database with same CATH topology

2FY9A 2RO5A 4JDMA 5ITJA 3O27A 1MVFD 2W1TA 2QA4I 2L66A 1UB4C 1Z0RA 2K1NA 2W1TB 1YSFA 2RO3A 5ITMA 2RO4A 1YFBA 4JDOA 3TNDB 2GLWA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2W1T B;  2RO4 A;  2FY9 A;  1UB4 C;  2RO5 A;  1Z0R A;  1YFB A;  3O27 A;  5ITJ A;  3TND B;  2GLW A;  1MVF D;  1YSF A;  2RO3 A;  5ITM A;  2W1T A;  2K1N A;  2L66 A; 
#chains in the Genus database with same CATH topology
 2FY9 A;  2RO5 A;  4JDM A;  5ITJ A;  3O27 A;  1MVF D;  2W1T A;  2QA4 I;  2L66 A;  1UB4 C;  1Z0R A;  2K1N A;  2W1T B;  1YSF A;  2RO3 A;  5ITM A;  2RO4 A;  1YFB A;  4JDO A;  3TND B;  2GLW A; 
#chains in the Genus database with same CATH homology
 2FY9 A;  2RO5 A;  4JDM A;  5ITJ A;  3O27 A;  1MVF D;  2W1T A;  2QA4 I;  2L66 A;  1UB4 C;  1Z0R A;  2K1N A;  2W1T B;  1YSF A;  2RO3 A;  5ITM A;  2RO4 A;  1YFB A;  4JDO A;  3TND B;  2GLW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2RO4A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations