2V3CA

Crystal structure of the srp54-srp19-7s.s srp rna complex of m. jannaschii
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
87
structure length
87
Chain Sequence
MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQLLKEICKIIKGKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Interaction of Signal-Recognition Particle 54 Gtpase Domain and Signal-Recognition Particle RNA in the Free Signal-Recognition Particle.
pubmed doi rcsb
molecule tags Signaling protein
source organism Methanocaldococcus jannaschii
molecule keywords SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN
total genus 20
structure length 87
sequence length 87
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 2v3cA00
1JIDA 3KTWA 3NDBA 3DLUA 2V3CA 1LNGA 1KVVA 3DLVA 1MFQB 3KTVB 4P3EB 4XCOA 5M73B 1L9AA 1KVNA
chains in the Genus database with same CATH superfamily
4DDWA 4TVAB 2YTZA 1PYSB 2RHQB 3DLUA 4IOHA 4P71A 2HG7A 4P75A 1EIYB 2V3CA 4DDVA 2EJTA 4DDUA 4P74A 1KVVA 3DLVA 1ND9A 4XCOA 2IY5B 1KVNA 4P72A 1LNGA 2LQ3A 3AXTA 2DULA 1B70B 2EJUA 3TEHB 1JIDA 3HFZB 4P73A 3KTWA 2CXIA 3PCOB 3USHA 1MFQB 1B7YB 5M73B 2AKWB 1L9AA 3L4GB 2ALYB 3NDBA 3AXSA 2RHSB 4DDTA 3KTVB 4P3EB 1JJCB 2AMCB
chains in the Genus database with same CATH topology
1JIDA 3KTWA 3NDBA 3DLUA 2V3CA 1LNGA 1KVVA 3DLVA 1MFQB 3KTVB 4P3EB 4XCOA 5M73B 1L9AA 1KVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JID A;  3KTW A;  3NDB A;  3DLU A;  2V3C A;  1LNG A;  1KVV A;  3DLV A;  1MFQ B;  3KTV B;  4P3E B;  4XCO A;  5M73 B;  1L9A A;  1KVN A; 
#chains in the Genus database with same CATH topology
 4DDW A;  4TVA B;  2YTZ A;  1PYS B;  2RHQ B;  3DLU A;  4IOH A;  4P71 A;  2HG7 A;  4P75 A;  1EIY B;  2V3C A;  4DDV A;  2EJT A;  4DDU A;  4P74 A;  1KVV A;  3DLV A;  1ND9 A;  4XCO A;  2IY5 B;  1KVN A;  4P72 A;  1LNG A;  2LQ3 A;  3AXT A;  2DUL A;  1B70 B;  2EJU A;  3TEH B;  1JID A;  3HFZ B;  4P73 A;  3KTW A;  2CXI A;  3PCO B;  3USH A;  1MFQ B;  1B7Y B;  5M73 B;  2AKW B;  1L9A A;  3L4G B;  2ALY B;  3NDB A;  3AXS A;  2RHS B;  4DDT A;  3KTV B;  4P3E B;  1JJC B;  2AMC B; 
#chains in the Genus database with same CATH homology
 1JID A;  3KTW A;  3NDB A;  3DLU A;  2V3C A;  1LNG A;  1KVV A;  3DLV A;  1MFQ B;  3KTV B;  4P3E B;  4XCO A;  5M73 B;  1L9A A;  1KVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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