2V3CA

Crystal structure of the srp54-srp19-7s.s srp rna complex of m. jannaschii
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
87
structure length
87
Chain Sequence
MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKGNKLQLLKEICKIIKGKN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Interaction of Signal-Recognition Particle 54 Gtpase Domain and Signal-Recognition Particle RNA in the Free Signal-Recognition Particle.
pubmed doi rcsb
molecule tags Signaling protein
source organism Methanocaldococcus jannaschii
molecule keywords SIGNAL RECOGNITION PARTICLE 19 KDA PROTEIN
total genus 20
structure length 87
sequence length 87
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 2v3cA00
1MFQB 1KVVA 3DLUA 4P3EB 4XCOA 3NDBA 3KTVB 1LNGA 5M73B 1L9AA 3KTWA 2V3CA 1JIDA 1KVNA 3DLVA
chains in the Genus database with same CATH superfamily
2DULA 1MFQB 1PYSB 4P3EB 4XCOA 3HFZB 3KTVB 3NDBA 1LNGA 3USHA 5M73B 4P73A 2EJUA 2AMCB 2RHQB 2CXIA 1KVVA 2YTZA 4TVAB 4IOHA 2EJTA 4DDVA 4P71A 4P74A 3TEHB 2HG7A 2V3CA 1JIDA 3PCOB 4DDTA 2LQ3A 3DLUA 3AXSA 1EIYB 1KVNA 4DDWA 1L9AA 3L4GB 3DLVA 3AXTA 1ND9A 2AKWB 2ALYB 1B7YB 2RHSB 3KTWA 4DDUA 1B70B 4P72A 4P75A 2IY5B 1JJCB
chains in the Genus database with same CATH topology
1MFQB 1KVVA 3DLUA 4P3EB 4XCOA 3NDBA 3KTVB 1LNGA 5M73B 1L9AA 3KTWA 2V3CA 1JIDA 1KVNA 3DLVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MFQ B;  1KVV A;  3DLU A;  4P3E B;  4XCO A;  3NDB A;  3KTV B;  1LNG A;  5M73 B;  1L9A A;  3KTW A;  2V3C A;  1JID A;  1KVN A;  3DLV A; 
#chains in the Genus database with same CATH topology
 2DUL A;  1MFQ B;  1PYS B;  4P3E B;  4XCO A;  3HFZ B;  3KTV B;  3NDB A;  1LNG A;  3USH A;  5M73 B;  4P73 A;  2EJU A;  2AMC B;  2RHQ B;  2CXI A;  1KVV A;  2YTZ A;  4TVA B;  4IOH A;  2EJT A;  4DDV A;  4P71 A;  4P74 A;  3TEH B;  2HG7 A;  2V3C A;  1JID A;  3PCO B;  4DDT A;  2LQ3 A;  3DLU A;  3AXS A;  1EIY B;  1KVN A;  4DDW A;  1L9A A;  3L4G B;  3DLV A;  3AXT A;  1ND9 A;  2AKW B;  2ALY B;  1B7Y B;  2RHS B;  3KTW A;  4DDU A;  1B70 B;  4P72 A;  4P75 A;  2IY5 B;  1JJC B; 
#chains in the Genus database with same CATH homology
 1MFQ B;  1KVV A;  3DLU A;  4P3E B;  4XCO A;  3NDB A;  3KTV B;  1LNG A;  5M73 B;  1L9A A;  3KTW A;  2V3C A;  1JID A;  1KVN A;  3DLV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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