2YJFM

Oligomeric assembly of actin bound to mrtf-a
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
121
structure length
121
Chain Sequence
APGSLSERKNVLQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRESLERARTEDYLKRKIRSRPERAELVRMHILEETSAEPSLQAKQLKLKRARLADDLNEKIAQRPERMELVEKNILPV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Motor protein
molecule keywords ACTIN, ALPHA SKELETAL MUSCLE
publication title Structure of a pentavalent G-actin*MRTF-A complex reveals how G-actin controls nucleocytoplasmic shuttling of a transcriptional coactivator.
pubmed doi rcsb
source organism Oryctolagus cuniculus
total genus 32
structure length 121
sequence length 121
ec nomenclature
pdb deposition date 2011-05-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
M PF02755 RPEL RPEL repeat
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.288.20 Mainly Alpha Orthogonal Bundle Cobalamin-dependent Methionine Synthase; domain 2 Cobalamin-dependent Methionine Synthase; domain 2 2yjfM02
2YJFM 3TPQM
chains in the Genus database with same CATH superfamily
1K98A 2YJFM 3IV9A 3TPQM 3IVAA 1MSKA 3BULA 1K7YA 2O2KA
chains in the Genus database with same CATH topology
2YJFM 3TPQM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YJF M;  3TPQ M; 
#chains in the Genus database with same CATH topology
 1K98 A;  2YJF M;  3IV9 A;  3TPQ M;  3IVA A;  1MSK A;  3BUL A;  1K7Y A;  2O2K A; 
#chains in the Genus database with same CATH homology
 2YJF M;  3TPQ M; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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