2YMBA

Structures of mitd1
Total Genus 46
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
155
structure length
153
Chain Sequence
HKQIKIEENATGFSYESLFREYLNETVTEVWIEDPYIRHTHQLYNFLRFCEMLIKCKVKTIHLLTSLDEGIEQVQQSRGLQEIEESLRSHGVLLEVQYSSSIHDREIRFNNGWMIKIGRGLDYFKKPQSRFSLGYCDFDLRPCHETTVDIFHK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Escrt-III Binding Protein Mitd1 is Involved in Cytokinesis and Has an Unanticipated Pld Fold that Binds Membranes.
pubmed doi rcsb
molecule tags Protein transport
source organism Homo sapiens
molecule keywords MIT DOMAIN-CONTAINING PROTEIN 1
total genus 46
structure length 153
sequence length 155
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-10-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04212 MIT MIT (microtubule interacting and transport) domain
A PF16565 MIT_C Phospholipase D-like domain at C-terminus of MIT
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.870.30 Alpha Beta 2-Layer Sandwich Endonuclease; Chain A Endonuclease; Chain A 2ymbA00
2YMBA 4A5ZA
chains in the Genus database with same CATH superfamily
3SQ3A 5BQTA 2F5TX 5BOXA 1JY1A 1V0WA 1VSRA 4GENA 2YMBA 1RFIA 1F0IA 4GGJA 1BYRA 1V0RA 2C1LA 3HSIA 1RFFA 1CW0A 5BPDA 1RGTA 1ODGA 1V0UA 4GEMA 4RCTA 1Q32A 1QZQA 2ZE4A 3HRLA 4A5ZA 1RH0A 1NOPA 3R3PA 5LZKA 2O8RA 3SQ8A 1V0VA 4GELA 1RGUA 2ZE9A 3QPHA 1V0YA 1MU9A 1XDPA 4GGKA 4H4AA 3SQ7A 4URJA 1V0TA 3SQ5A 5BPIA 1RG1A 1MU7A 1RG2A 1V0SA 1BYSA 1XDOA
chains in the Genus database with same CATH topology
2YMBA 4A5ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2YMB A;  4A5Z A; 
#chains in the Genus database with same CATH topology
 3SQ3 A;  5BQT A;  2F5T X;  5BOX A;  1JY1 A;  1V0W A;  1VSR A;  4GEN A;  2YMB A;  1RFI A;  1F0I A;  4GGJ A;  1BYR A;  1V0R A;  2C1L A;  3HSI A;  1RFF A;  1CW0 A;  5BPD A;  1RGT A;  1ODG A;  1V0U A;  4GEM A;  4RCT A;  1Q32 A;  1QZQ A;  2ZE4 A;  3HRL A;  4A5Z A;  1RH0 A;  1NOP A;  3R3P A;  5LZK A;  2O8R A;  3SQ8 A;  1V0V A;  4GEL A;  1RGU A;  2ZE9 A;  3QPH A;  1V0Y A;  1MU9 A;  1XDP A;  4GGK A;  4H4A A;  3SQ7 A;  4URJ A;  1V0T A;  3SQ5 A;  5BPI A;  1RG1 A;  1MU7 A;  1RG2 A;  1V0S A;  1BYS A;  1XDO A; 
#chains in the Genus database with same CATH homology
 2YMB A;  4A5Z A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...