2OBDA

Crystal structure of cholesteryl ester transfer protein
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
472
structure length
472
Chain Sequence
b'TSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSIASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQLTADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVAYTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSESIQSFLQSMITAVGIPEVMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Cholesteryl ester transfer protein
publication title Crystal structure of cholesteryl ester transfer protein reveals a long tunnel and four bound lipid molecules.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Lipid transport
total genus 137
structure length 472
sequence length 472
ec nomenclature
pdb deposition date 2006-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01273 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
A PF02886 LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 2obdA02
3.15.20.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 2 Bactericidal permeability-increasing protein; domain 2 2obdA01
4KGOA 5I7JA 5I7LA 1EWFA 4F2AA 4M4DA 4EWSA 2OBDA 3ZPMA 4KGHA 5I7KA 1BP1A
chains in the Genus database with same CATH superfamily
1EWFA 3AOTA 4M4DA 4EWSA 4G0SA 3L6IA 3ZPMA 4KGHA 3A1ZA 3AOSA 5I7JA 4F2AA 1USUB 2RCKA 1USVB 3UV1A 5I7KA 1BP1A 3E8WA 4KGOA 3E8TA 5I7LA 3H4ZA 3N72A 2OBDA 2RQFA
chains in the Genus database with same CATH topology
1EWFA 3AOTA 4M4DA 4EWSA 4G0SA 3L6IA 3ZPMA 4KGHA 3A1ZA 3AOSA 5I7JA 4F2AA 1USUB 2RCKA 1USVB 3UV1A 5I7KA 1BP1A 3E8WA 4KGOA 3E8TA 5I7LA 3H4ZA 3N72A 2OBDA 2RQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4KGO A;  5I7J A;  5I7L A;  1EWF A;  4F2A A;  4M4D A;  4EWS A;  2OBD A;  3ZPM A;  4KGH A;  5I7K A;  1BP1 A; 
#chains in the Genus database with same CATH topology
 1EWF A;  3AOT A;  4M4D A;  4EWS A;  4G0S A;  3L6I A;  3ZPM A;  4KGH A;  3A1Z A;  3AOS A;  5I7J A;  4F2A A;  1USU B;  2RCK A;  1USV B;  3UV1 A;  5I7K A;  1BP1 A;  3E8W A;  4KGO A;  3E8T A;  5I7L A;  3H4Z A;  3N72 A;  2OBD A;  2RQF A; 
#chains in the Genus database with same CATH homology
 1EWF A;  3AOT A;  4M4D A;  4EWS A;  4G0S A;  3L6I A;  3ZPM A;  4KGH A;  3A1Z A;  3AOS A;  5I7J A;  4F2A A;  1USU B;  2RCK A;  1USV B;  3UV1 A;  5I7K A;  1BP1 A;  3E8W A;  4KGO A;  3E8T A;  5I7L A;  3H4Z A;  3N72 A;  2OBD A;  2RQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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