2OBDA

Crystal structure of cholesteryl ester transfer protein
Total Genus 137
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
137
sequence length
472
structure length
472
Chain Sequence
TSHEAGIVCRITKPALLVLNHETAKVIQTAFQRASYPDITGEKAMMLLGQVKYGLHNIQISHLSIASSQVELVEAKSIDVSIQDVSVVFKGTLKYGYTTAWWLGIDQSIDFEIDSAIDLQINTQLTADSGRVRTDAPDCYLSFHKLLLHLQGEREPGWIKQLFTNFISFTLKLVLKGQICKEINVISNIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLESHHKGHFIYKDVSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSLAKVAFQDGRLMLSLMGDEFKAVLETWGFNTNQEIFQEVVGGFPSQAQVTVHCLKMPKISCQNKGVVVDSSVMVKFLFPRPDQQHSVAYTFEEDIVTTVQASYSKKKLFLSLLDFQITPKTVSNLTESSSESIQSFLQSMITAVGIPEVMSRLEVVFTALMNSKGVSLFDIINPEIITRDGFLLLQMDFGFPEHLLVDFLQSLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lipid transport
molecule keywords Cholesteryl ester transfer protein
publication title Crystal structure of cholesteryl ester transfer protein reveals a long tunnel and four bound lipid molecules.
pubmed doi rcsb
source organism Homo sapiens
total genus 137
structure length 472
sequence length 472
ec nomenclature
pdb deposition date 2006-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01273 LBP_BPI_CETP LBP / BPI / CETP family, N-terminal domain
A PF02886 LBP_BPI_CETP_C LBP / BPI / CETP family, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 2obdA02
3.15.20.10 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 2 Bactericidal permeability-increasing protein; domain 2 2obdA01
1BP1A 4EWSA 5I7JA 1EWFA 5I7KA 2OBDA 4KGOA 3ZPMA 4M4DA 4KGHA 5I7LA 4F2AA
chains in the Genus database with same CATH superfamily
1BP1A 2RQFA 5I7KA 2OBDA 4M4DA 4G0SA 1USVB 3A1ZA 4F2AA 1USUB 3E8TA 4EWSA 1EWFA 2RCKA 3AOTA 4KGOA 3ZPMA 3UV1A 5I7JA 4KGHA 3N72A 3E8WA 3AOSA 3H4ZA 3L6IA 5I7LA
chains in the Genus database with same CATH topology
1BP1A 2RQFA 5I7KA 2OBDA 4M4DA 4G0SA 1USVB 3A1ZA 4F2AA 1USUB 3E8TA 4EWSA 1EWFA 2RCKA 3AOTA 4KGOA 3ZPMA 3UV1A 5I7JA 4KGHA 3N72A 3E8WA 3AOSA 3H4ZA 3L6IA 5I7LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BP1 A;  4EWS A;  5I7J A;  1EWF A;  5I7K A;  2OBD A;  4KGO A;  3ZPM A;  4M4D A;  4KGH A;  5I7L A;  4F2A A; 
#chains in the Genus database with same CATH topology
 1BP1 A;  2RQF A;  5I7K A;  2OBD A;  4M4D A;  4G0S A;  1USV B;  3A1Z A;  4F2A A;  1USU B;  3E8T A;  4EWS A;  1EWF A;  2RCK A;  3AOT A;  4KGO A;  3ZPM A;  3UV1 A;  5I7J A;  4KGH A;  3N72 A;  3E8W A;  3AOS A;  3H4Z A;  3L6I A;  5I7L A; 
#chains in the Genus database with same CATH homology
 1BP1 A;  2RQF A;  5I7K A;  2OBD A;  4M4D A;  4G0S A;  1USV B;  3A1Z A;  4F2A A;  1USU B;  3E8T A;  4EWS A;  1EWF A;  2RCK A;  3AOT A;  4KGO A;  3ZPM A;  3UV1 A;  5I7J A;  4KGH A;  3N72 A;  3E8W A;  3AOS A;  3H4Z A;  3L6I A;  5I7L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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