2RCKA

Crystal structure of juvenile hormone binding protein from galleria mellonella hemolymph
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
221
structure length
221
Chain Sequence
SKLNLSTEPCDVSDIECISKATQVFLDNTYQGIPEYNIKKLDPITIPSLEKSIEKINLNVRYNNLKVTGFKNQKISHFTLVRDTKAVNFKTKVNFTAEGKLVIELPKSSKTYTGEVTIEASAEGGAAYSYSVKTDDKGVEHYEAGPETVSCEIFGEPTLSVSSTLEDALKLDSDFKKIFTEYGKQLTEGRKQTACRIVETVYAVSVHNIRAAARILPKSAY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone binding protein
molecule keywords Juvenile hormone binding protein
publication title Insect Juvenile Hormone Binding Protein Shows Ancestral Fold Present in Human Lipid-Binding Proteins.
pubmed doi rcsb
total genus 60
structure length 221
sequence length 221
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-09-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.30 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 2rckA01
3E8WA 4G0SA 3A1ZA 3AOTA 3E8TA 2RCKA 2RQFA 3AOSA
chains in the Genus database with same CATH superfamily
3E8WA 4KGHA 3UV1A 4KGOA 5I7JA 5I7KA 1BP1A 1USVB 2RQFA 3AOSA 3H4ZA 3A1ZA 3AOTA 1EWFA 1USUB 4EWSA 2RCKA 3L6IA 4M4DA 2OBDA 3E8TA 3ZPMA 5I7LA 3N72A 4F2AA 4G0SA
chains in the Genus database with same CATH topology
3E8WA 4KGHA 3UV1A 4KGOA 5I7JA 5I7KA 1BP1A 1USVB 2RQFA 3AOSA 3H4ZA 3A1ZA 3AOTA 1EWFA 1USUB 4EWSA 2RCKA 3L6IA 4M4DA 2OBDA 3E8TA 3ZPMA 5I7LA 3N72A 4F2AA 4G0SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E8W A;  4G0S A;  3A1Z A;  3AOT A;  3E8T A;  2RCK A;  2RQF A;  3AOS A; 
#chains in the Genus database with same CATH topology
 3E8W A;  4KGH A;  3UV1 A;  4KGO A;  5I7J A;  5I7K A;  1BP1 A;  1USV B;  2RQF A;  3AOS A;  3H4Z A;  3A1Z A;  3AOT A;  1EWF A;  1USU B;  4EWS A;  2RCK A;  3L6I A;  4M4D A;  2OBD A;  3E8T A;  3ZPM A;  5I7L A;  3N72 A;  4F2A A;  4G0S A; 
#chains in the Genus database with same CATH homology
 3E8W A;  4KGH A;  3UV1 A;  4KGO A;  5I7J A;  5I7K A;  1BP1 A;  1USV B;  2RQF A;  3AOS A;  3H4Z A;  3A1Z A;  3AOT A;  1EWF A;  1USU B;  4EWS A;  2RCK A;  3L6I A;  4M4D A;  2OBD A;  3E8T A;  3ZPM A;  5I7L A;  3N72 A;  4F2A A;  4G0S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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