3KTVB

Crystal structure of the human srp19/s-domain srp rna complex
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the assembly of the human and archaeal signal recognition particles.
pubmed doi rcsb
molecule tags Rna/rna binding protein
source organism Homo sapiens
molecule keywords SRP RNA
total genus 21
structure length 106
sequence length 106
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 3ktvB00
1KVNA 1LNGA 3DLUA 1KVVA 1L9AA 1JIDA 3KTVB 3NDBA 3DLVA 5M73B 4XCOA 2V3CA 4P3EB 1MFQB 3KTWA
chains in the Genus database with same CATH superfamily
2EJUA 2IY5B 3USHA 2AKWB 2RHQB 2CXIA 3AXTA 1MFQB 4P71A 3L4GB 1L9AA 4DDUA 4P73A 5M73B 4XCOA 4DDTA 1JJCB 2YTZA 1B7YB 2LQ3A 3PCOB 4DDVA 1EIYB 3HFZB 1ND9A 4P75A 4P74A 1LNGA 4IOHA 1KVNA 1KVVA 2AMCB 1JIDA 3NDBA 2ALYB 2V3CA 1PYSB 4DDWA 4P3EB 3KTWA 2DULA 3DLUA 4TVAB 1B70B 3KTVB 3DLVA 2EJTA 3TEHB 3AXSA 2RHSB 2HG7A 4P72A
chains in the Genus database with same CATH topology
1KVNA 1LNGA 3DLUA 1KVVA 1L9AA 1JIDA 3KTVB 3NDBA 3DLVA 5M73B 4XCOA 2V3CA 4P3EB 1MFQB 3KTWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KVN A;  1LNG A;  3DLU A;  1KVV A;  1L9A A;  1JID A;  3KTV B;  3NDB A;  3DLV A;  5M73 B;  4XCO A;  2V3C A;  4P3E B;  1MFQ B;  3KTW A; 
#chains in the Genus database with same CATH topology
 2EJU A;  2IY5 B;  3USH A;  2AKW B;  2RHQ B;  2CXI A;  3AXT A;  1MFQ B;  4P71 A;  3L4G B;  1L9A A;  4DDU A;  4P73 A;  5M73 B;  4XCO A;  4DDT A;  1JJC B;  2YTZ A;  1B7Y B;  2LQ3 A;  3PCO B;  4DDV A;  1EIY B;  3HFZ B;  1ND9 A;  4P75 A;  4P74 A;  1LNG A;  4IOH A;  1KVN A;  1KVV A;  2AMC B;  1JID A;  3NDB A;  2ALY B;  2V3C A;  1PYS B;  4DDW A;  4P3E B;  3KTW A;  2DUL A;  3DLU A;  4TVA B;  1B70 B;  3KTV B;  3DLV A;  2EJT A;  3TEH B;  3AXS A;  2RHS B;  2HG7 A;  4P72 A; 
#chains in the Genus database with same CATH homology
 1KVN A;  1LNG A;  3DLU A;  1KVV A;  1L9A A;  1JID A;  3KTV B;  3NDB A;  3DLV A;  5M73 B;  4XCO A;  2V3C A;  4P3E B;  1MFQ B;  3KTW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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