3KTVB

Crystal structure of the human srp19/s-domain srp rna complex
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the assembly of the human and archaeal signal recognition particles.
pubmed doi rcsb
molecule tags Rna/rna binding protein
source organism Homo sapiens
molecule keywords SRP RNA
total genus 21
structure length 106
sequence length 106
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 3ktvB00
1KVVA 4XCOA 2V3CA 3KTWA 3NDBA 1MFQB 1LNGA 1L9AA 4P3EB 3DLUA 3DLVA 3KTVB 1JIDA 5M73B 1KVNA
chains in the Genus database with same CATH superfamily
4DDVA 2ALYB 3AXTA 4IOHA 4P72A 4TVAB 4P73A 1JIDA 2DULA 1B70B 1JJCB 1KVVA 2RHQB 4P75A 2EJTA 1LNGA 2AKWB 1EIYB 3KTVB 4DDWA 5M73B 1KVNA 4XCOA 4DDTA 2CXIA 2V3CA 3KTWA 3PCOB 2EJUA 3HFZB 4P74A 1L9AA 4P3EB 2HG7A 2RHSB 3DLVA 3DLUA 4P71A 3TEHB 1ND9A 3AXSA 2AMCB 2LQ3A 1B7YB 1MFQB 2IY5B 3NDBA 4DDUA 3L4GB 2YTZA 1PYSB 3USHA
chains in the Genus database with same CATH topology
1KVVA 4XCOA 2V3CA 3KTWA 3NDBA 1MFQB 1LNGA 1L9AA 4P3EB 3DLUA 3DLVA 3KTVB 1JIDA 5M73B 1KVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KVV A;  4XCO A;  2V3C A;  3KTW A;  3NDB A;  1MFQ B;  1LNG A;  1L9A A;  4P3E B;  3DLU A;  3DLV A;  3KTV B;  1JID A;  5M73 B;  1KVN A; 
#chains in the Genus database with same CATH topology
 4DDV A;  2ALY B;  3AXT A;  4IOH A;  4P72 A;  4TVA B;  4P73 A;  1JID A;  2DUL A;  1B70 B;  1JJC B;  1KVV A;  2RHQ B;  4P75 A;  2EJT A;  1LNG A;  2AKW B;  1EIY B;  3KTV B;  4DDW A;  5M73 B;  1KVN A;  4XCO A;  4DDT A;  2CXI A;  2V3C A;  3KTW A;  3PCO B;  2EJU A;  3HFZ B;  4P74 A;  1L9A A;  4P3E B;  2HG7 A;  2RHS B;  3DLV A;  3DLU A;  4P71 A;  3TEH B;  1ND9 A;  3AXS A;  2AMC B;  2LQ3 A;  1B7Y B;  1MFQ B;  2IY5 B;  3NDB A;  4DDU A;  3L4G B;  2YTZ A;  1PYS B;  3USH A; 
#chains in the Genus database with same CATH homology
 1KVV A;  4XCO A;  2V3C A;  3KTW A;  3NDB A;  1MFQ B;  1LNG A;  1L9A A;  4P3E B;  3DLU A;  3DLV A;  3KTV B;  1JID A;  5M73 B;  1KVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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