3KTVB

Crystal structure of the human srp19/s-domain srp rna complex
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
ADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural insights into the assembly of the human and archaeal signal recognition particles.
pubmed doi rcsb
molecule tags Rna/rna binding protein
source organism Homo sapiens
molecule keywords SRP RNA
total genus 21
structure length 106
sequence length 106
chains with identical sequence D
ec nomenclature
pdb deposition date 2009-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF01922 SRP19 SRP19 protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.30 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Signal recognition particle, SRP19-like subunit 3ktvB00
2V3CA 3NDBA 4XCOA 3KTVB 1MFQB 1L9AA 1KVVA 3DLVA 4P3EB 3KTWA 5M73B 1JIDA 3DLUA 1LNGA 1KVNA
chains in the Genus database with same CATH superfamily
3HFZB 1PYSB 2RHSB 3AXSA 1ND9A 1L9AA 3DLVA 3TEHB 1JIDA 3DLUA 3NDBA 1KVNA 4P71A 1B70B 3L4GB 2IY5B 2EJTA 2EJUA 3AXTA 4DDVA 4TVAB 1MFQB 4DDWA 2RHQB 3PCOB 2ALYB 4P74A 3USHA 2V3CA 4P72A 1JJCB 4XCOA 4P75A 3KTVB 1KVVA 4P3EB 3KTWA 2AKWB 4IOHA 1LNGA 4DDUA 1B7YB 2LQ3A 1EIYB 2AMCB 2YTZA 4DDTA 4P73A 5M73B 2HG7A 2CXIA 2DULA
chains in the Genus database with same CATH topology
2V3CA 3NDBA 4XCOA 3KTVB 1MFQB 1L9AA 1KVVA 3DLVA 4P3EB 3KTWA 5M73B 1JIDA 3DLUA 1LNGA 1KVNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V3C A;  3NDB A;  4XCO A;  3KTV B;  1MFQ B;  1L9A A;  1KVV A;  3DLV A;  4P3E B;  3KTW A;  5M73 B;  1JID A;  3DLU A;  1LNG A;  1KVN A; 
#chains in the Genus database with same CATH topology
 3HFZ B;  1PYS B;  2RHS B;  3AXS A;  1ND9 A;  1L9A A;  3DLV A;  3TEH B;  1JID A;  3DLU A;  3NDB A;  1KVN A;  4P71 A;  1B70 B;  3L4G B;  2IY5 B;  2EJT A;  2EJU A;  3AXT A;  4DDV A;  4TVA B;  1MFQ B;  4DDW A;  2RHQ B;  3PCO B;  2ALY B;  4P74 A;  3USH A;  2V3C A;  4P72 A;  1JJC B;  4XCO A;  4P75 A;  3KTV B;  1KVV A;  4P3E B;  3KTW A;  2AKW B;  4IOH A;  1LNG A;  4DDU A;  1B7Y B;  2LQ3 A;  1EIY B;  2AMC B;  2YTZ A;  4DDT A;  4P73 A;  5M73 B;  2HG7 A;  2CXI A;  2DUL A; 
#chains in the Genus database with same CATH homology
 2V3C A;  3NDB A;  4XCO A;  3KTV B;  1MFQ B;  1L9A A;  1KVV A;  3DLV A;  4P3E B;  3KTW A;  5M73 B;  1JID A;  3DLU A;  1LNG A;  1KVN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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