The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
228
|
sequence length |
550
|
structure length |
550
|
Chain Sequence |
MKGYLTFVLHTHIPYVRKHGKWPFGEEWVFEAISETYIPLLMEFERLRDSGVKFGIVINVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAVSYMLNYFRKVYDYWKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPECAYRPAGEWELPGGRKVKRQGIEKFLEEFGLRYFFVESRLIDEGPASNVYGEVLIADTEKTTLRPYWIKGSNVAVFARNRETGHQVWSAHYGYPGDFWYREFHKKAPKSGGQYWRITSKEVGLGEKEFYDPDKAMERVEEHARHFVSLVERLLREHEEKFGEKGIIVAPYDTELFGHWWFEGVKWLGRVLELLYQRGVETPTLSRFLEEYSGEKHEIELPEGSWGANSDHSTWWNEETEWTWPHIYRAEDRMVAIVSRFRGRDELTNRVIEQLARELLILEASDWQFLITTGQAKEYAKRRVLIHSRDFHRLANELVRYVKIGEFDVKLLEELEERDNPFRPVVVGPYVSENPPELEEYVEPPEVPP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
pubmed doi rcsb |
| molecule tags |
Transferase
|
| source organism |
Thermococcus kodakarensis
|
| molecule keywords |
alpha-amylase, GH57 family
|
| total genus |
228
|
| structure length |
550
|
| sequence length |
550
|
| ec nomenclature |
ec
2.4.1.18: 1,4-alpha-glucan branching enzyme. |
| pdb deposition date | 2010-05-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03065 | Glyco_hydro_57 | Glycosyl hydrolase family 57 |
| A | PF09210 | DUF1957 | Domain of unknown function (DUF1957) |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Up-down Bundle | immunoglobulin/albumin-binding domain-like | Families 57/38 glycoside transferase, middle domain | ||
| Alpha Beta | Alpha-Beta Barrel | 7-stranded beta/alpha barrel | Glycoside hydrolase 38, N terminal domain |
#chains in the Genus database with same CATH superfamily 3BVU A; 1HTY A; 2F1A A; 1TQV A; 3BUQ A; 3BUI A; 2F7P A; 3BUB A; 3DDF A; 3P0B A; 1TQT A; 3EJP A; 1R33 A; 1HWW A; 3BUP A; 1PS3 A; 3CZN A; 3D4Y A; 3DDG A; 3CZS A; 1QWU A; 2F7Q A; 1UFA A; 3EJR A; 5KBP A; 2OW6 A; 3BVV A; 3D51 A; 3EJT A; 2FYV A; 3DX4 A; 2B5D X; 3BVW A; 1O7D A; 1TQW A; 2F1B A; 3BVT A; 2OW7 A; 2F18 A; 3N98 A; 3D52 A; 3N8T A; 3DX2 A; 3EJS A; 1HXK A; 3BLB A; 1TQU A; 3DX1 A; 3D50 A; 1QX1 A; 3BUD A; 3BVX A; 2F7O A; 3CV5 A; 3DX3 A; 1R34 A; 3EJQ A; 3DX0 A; 3LVT A; 3EJU A; 2F7R A; 1TQS A; 1QWN A; 3N92 A; 3D4Z A; 2ALW A; #chains in the Genus database with same CATH topology 3BVU A; 3BUI A; 2F7P A; 3DDF A; 3BUP A; 3D4Y A; 2ZT6 A; 2Q5I A; 5KBP A; 3D52 A; 2ZT7 A; 1TQU A; 3DX1 A; 3D50 A; 2ZT5 A; 3BVX A; 3CV5 A; 3LVT A; 1R34 A; 1K1X A; 1TQS A; 1QWN A; 2F1A A; 1TQV A; 1K1W A; 3CZS A; 1K1Y A; 3EJR A; 2Q5H A; 3BVW A; 1O7D A; 1TQW A; 2F18 A; 3DX2 A; 3N8T A; 1HXK A; 3EJU A; 2ALW A; 1HTY A; 1R33 A; 1PS3 A; 3CZN A; 2ZT8 A; 3DDG A; 1QWU A; 1UFA A; 3D51 A; 3EJT A; 2FYV A; 2F1B A; 3BVT A; 3EJS A; 3BLB A; 3BUD A; 3DX3 A; 3DX0 A; 2F7R A; 3D4Z A; 3BUQ A; 3BUB A; 3P0B A; 1TQT A; 2PMF A; 1HWW A; 4KQE A; 2ZXF A; 2F7Q A; 2OW6 A; 3BVV A; 3DX4 A; 2B5D X; 2OW7 A; 3N98 A; 2PME A; 1QX1 A; 2F7O A; 3EJQ A; 3N92 A; 3EJP A; #chains in the Genus database with same CATH homology 3BVU A; 1HTY A; 2F1A A; 1TQV A; 3BUQ A; 3BUI A; 2F7P A; 3BUB A; 3DDF A; 3P0B A; 1TQT A; 3EJP A; 1R33 A; 1HWW A; 3BUP A; 1PS3 A; 3CZN A; 3D4Y A; 3DDG A; 3CZS A; 1QWU A; 2F7Q A; 1UFA A; 3EJR A; 5KBP A; 2OW6 A; 3BVV A; 3D51 A; 3EJT A; 2FYV A; 3DX4 A; 2B5D X; 3BVW A; 1O7D A; 1TQW A; 2F1B A; 3BVT A; 2OW7 A; 2F18 A; 3N98 A; 3D52 A; 3N8T A; 3DX2 A; 3EJS A; 1HXK A; 3BLB A; 1TQU A; 3DX1 A; 3D50 A; 1QX1 A; 3BUD A; 3BVX A; 2F7O A; 3CV5 A; 3DX3 A; 1R34 A; 3EJQ A; 3DX0 A; 3LVT A; 3EJU A; 2F7R A; 1TQS A; 1QWN A; 3N92 A; 3D4Z A; 2ALW A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
