3N8TA

Native structure of tk1436, a gh57 branching enzyme from hyperthermophilic archaeon thermococcus kodakaraensis
Total Genus 228

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
228
sequence length
550
structure length
550
Chain Sequence
MKGYLTFVLHTHIPYVRKHGKWPFGEEWVFEAISETYIPLLMEFERLRDSGVKFGIVINVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAVSYMLNYFRKVYDYWKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPECAYRPAGEWELPGGRKVKRQGIEKFLEEFGLRYFFVESRLIDEGPASNVYGEVLIADTEKTTLRPYWIKGSNVAVFARNRETGHQVWSAHYGYPGDFWYREFHKKAPKSGGQYWRITSKEVGLGEKEFYDPDKAMERVEEHARHFVSLVERLLREHEEKFGEKGIIVAPYDTELFGHWWFEGVKWLGRVLELLYQRGVETPTLSRFLEEYSGEKHEIELPEGSWGANSDHSTWWNEETEWTWPHIYRAEDRMVAIVSRFRGRDELTNRVIEQLARELLILEASDWQFLITTGQAKEYAKRRVLIHSRDFHRLANELVRYVKIGEFDVKLLEELEERDNPFRPVVVGPYVSENPPELEEYVEPPEVPP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
source organism Thermococcus kodakarensis
publication title Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
pubmed doi rcsb
molecule keywords alpha-amylase, GH57 family
total genus 228
structure length 550
sequence length 550
ec nomenclature ec 2.4.1.18: 1,4-alpha-glucan branching enzyme.
pdb deposition date 2010-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03065 Glyco_hydro_57 Glycosyl hydrolase family 57
A PF09210 DUF1957 Domain of unknown function (DUF1957)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1430.10 Mainly Alpha Up-down Bundle immunoglobulin/albumin-binding domain-like Families 57/38 glycoside transferase, middle domain 3n8tA02
3.20.110.10 Alpha Beta Alpha-Beta Barrel 7-stranded beta/alpha barrel Glycoside hydrolase 38, N terminal domain 3n8tA01
1QWUA 1O7DA 3N92A 1PS3A 1TQVA 3BVTA 1QX1A 3D52A 3BVVA 3DX2A 3EJRA 5KBPA 3CZSA 3BUQA 3DX3A 1QWNA 2F7RA 3N98A 2FYVA 3EJQA 1TQWA 2F7QA 1HWWA 3D50A 3DDGA 2F7PA 3BLBA 3EJPA 3P0BA 3BVUA 3D51A 3D4YA 3BVXA 3DX4A 3EJSA 2F1AA 2B5DX 1R34A 2F7OA 2F1BA 1UFAA 3BUPA 1HXKA 3N8TA 3BVWA 1TQSA 3DDFA 3BUBA 2OW6A 3LVTA 1TQUA 3CV5A 2ALWA 1TQTA 1HTYA 1R33A 3CZNA 3D4ZA 3BUIA 3DX0A 3EJUA 3DX1A 3BUDA 2OW7A 2F18A 3EJTA
chains in the Genus database with same CATH superfamily
1QWUA 1TQVA 3N92A 2ZT6A 3D52A 3EJRA 5KBPA 3BUQA 3DX3A 2F7QA 1HWWA 1K1WA 1K1XA 3DX4A 3EJSA 2B5DX 2Q5IA 3BUPA 3N8TA 1TQUA 2ALWA 1HTYA 3D4ZA 3CZSA 3EJQA 2F7PA 3P0BA 3D51A 3D4YA 1HXKA 3BVWA 3LVTA 2PMEA 3BUIA 2OW7A 3EJTA 2ZT7A 1K1YA 3BVTA 1PS3A 3N98A 1TQWA 3D50A 3DDGA 3BLBA 2ZT5A 3BVUA 3BVXA 1R34A 2F1BA 3BUBA 2OW6A 3CV5A 1TQTA 1R33A 3DX0A 2F7RA 2F18A 4KQEA 1O7DA 1QX1A 3BVVA 3DX2A 2Q5HA 1QWNA 2FYVA 2ZT8A 3EJPA 2F1AA 2F7OA 1UFAA 2PMFA 1TQSA 3DDFA 3CZNA 3DX1A 3BUDA 3EJUA 2ZXFA
chains in the Genus database with same CATH topology
1QWUA 1O7DA 3N92A 1PS3A 1TQVA 3BVTA 1QX1A 3D52A 3BVVA 3DX2A 3EJRA 5KBPA 3CZSA 3BUQA 3DX3A 1QWNA 2F7RA 3N98A 2FYVA 3EJQA 1TQWA 2F7QA 1HWWA 3D50A 3DDGA 2F7PA 3BLBA 3EJPA 3P0BA 3BVUA 3D51A 3D4YA 3BVXA 3DX4A 3EJSA 2F1AA 2B5DX 1R34A 2F7OA 2F1BA 1UFAA 3BUPA 1HXKA 3N8TA 3BVWA 1TQSA 3DDFA 3BUBA 2OW6A 3LVTA 1TQUA 3CV5A 2ALWA 1TQTA 1HTYA 1R33A 3CZNA 3D4ZA 3BUIA 3DX0A 3EJUA 3DX1A 3BUDA 2OW7A 2F18A 3EJTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QWU A;  1O7D A;  3N92 A;  1PS3 A;  1TQV A;  3BVT A;  1QX1 A;  3D52 A;  3BVV A;  3DX2 A;  3EJR A;  5KBP A;  3CZS A;  3BUQ A;  3DX3 A;  1QWN A;  2F7R A;  3N98 A;  2FYV A;  3EJQ A;  1TQW A;  2F7Q A;  1HWW A;  3D50 A;  3DDG A;  2F7P A;  3BLB A;  3EJP A;  3P0B A;  3BVU A;  3D51 A;  3D4Y A;  3BVX A;  3DX4 A;  3EJS A;  2F1A A;  2B5D X;  1R34 A;  2F7O A;  2F1B A;  1UFA A;  3BUP A;  1HXK A;  3N8T A;  3BVW A;  1TQS A;  3DDF A;  3BUB A;  2OW6 A;  3LVT A;  1TQU A;  3CV5 A;  2ALW A;  1TQT A;  1HTY A;  1R33 A;  3CZN A;  3D4Z A;  3BUI A;  3DX0 A;  3EJU A;  3DX1 A;  3BUD A;  2OW7 A;  2F18 A;  3EJT A; 
#chains in the Genus database with same CATH topology
 1QWU A;  1TQV A;  3N92 A;  2ZT6 A;  3D52 A;  3EJR A;  5KBP A;  3BUQ A;  3DX3 A;  2F7Q A;  1HWW A;  1K1W A;  1K1X A;  3DX4 A;  3EJS A;  2B5D X;  2Q5I A;  3BUP A;  3N8T A;  1TQU A;  2ALW A;  1HTY A;  3D4Z A;  3CZS A;  3EJQ A;  2F7P A;  3P0B A;  3D51 A;  3D4Y A;  1HXK A;  3BVW A;  3LVT A;  2PME A;  3BUI A;  2OW7 A;  3EJT A;  2ZT7 A;  1K1Y A;  3BVT A;  1PS3 A;  3N98 A;  1TQW A;  3D50 A;  3DDG A;  3BLB A;  2ZT5 A;  3BVU A;  3BVX A;  1R34 A;  2F1B A;  3BUB A;  2OW6 A;  3CV5 A;  1TQT A;  1R33 A;  3DX0 A;  2F7R A;  2F18 A;  4KQE A;  1O7D A;  1QX1 A;  3BVV A;  3DX2 A;  2Q5H A;  1QWN A;  2FYV A;  2ZT8 A;  3EJP A;  2F1A A;  2F7O A;  1UFA A;  2PMF A;  1TQS A;  3DDF A;  3CZN A;  3DX1 A;  3BUD A;  3EJU A;  2ZXF A; 
#chains in the Genus database with same CATH homology
 1QWU A;  1O7D A;  3N92 A;  1PS3 A;  1TQV A;  3BVT A;  1QX1 A;  3D52 A;  3BVV A;  3DX2 A;  3EJR A;  5KBP A;  3CZS A;  3BUQ A;  3DX3 A;  1QWN A;  2F7R A;  3N98 A;  2FYV A;  3EJQ A;  1TQW A;  2F7Q A;  1HWW A;  3D50 A;  3DDG A;  2F7P A;  3BLB A;  3EJP A;  3P0B A;  3BVU A;  3D51 A;  3D4Y A;  3BVX A;  3DX4 A;  3EJS A;  2F1A A;  2B5D X;  1R34 A;  2F7O A;  2F1B A;  1UFA A;  3BUP A;  1HXK A;  3N8T A;  3BVW A;  1TQS A;  3DDF A;  3BUB A;  2OW6 A;  3LVT A;  1TQU A;  3CV5 A;  2ALW A;  1TQT A;  1HTY A;  1R33 A;  3CZN A;  3D4Z A;  3BUI A;  3DX0 A;  3EJU A;  3DX1 A;  3BUD A;  2OW7 A;  2F18 A;  3EJT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.