3N92 | Genus

Total Genus 213

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	213
sequence length	550
structure length	550
Chain Sequence	MKGYLTFVLHTHIPYVRKHGKWPFGEEWVFEAISETYIPLLMEFERLRDSGVKFGIVINVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAVSYMLNYFRKVYDYWKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPECAYRPAGEWELPGGRKVKRQGIEKFLEEFGLRYFFVESRLIDEGPASNVYGEVLIADTEKTTLRPYWIKGSNVAVFARNRETGHQVWSAHYGYPGDFWYREFHKKAPKSGGQYWRITSKEVGLGEKEFYDPDKAMERVEEHARHFVSLVERLLREHEEKFGEKGIIVAPYDTELFGHWWFEGVKWLGRVLELLYQRGVETPTLSRFLEEYSGEKHEIELPEGSWGANSDHSTWWNEETEWTWPHIYRAEDRMVAIVSRFRGRDELTNRVIEQLARELLILEASDWQFLITTGQAKEYAKRRVLIHSRDFHRLANELVRYVKIGEFDVKLLEELEERDNPFRPVVVGPYVSENPPELEEYVEPPEVPP

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Thermococcus kodakarensis
publication title	Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1. pubmed doi rcsb
molecule keywords	alpha-amylase, GH57 family
total genus	213
structure length	550
sequence length	550
ec nomenclature	ec 2.4.1.18: 1,4-alpha-glucan branching enzyme.
pdb deposition date	2010-05-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03065	Glyco_hydro_57	Glycosyl hydrolase family 57
A	PF09210	DUF1957	Domain of unknown function (DUF1957)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1430.10	Mainly Alpha	Up-down Bundle	immunoglobulin/albumin-binding domain-like	Families 57/38 glycoside transferase, middle domain	3n92A02
3.20.110.10	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel	Glycoside hydrolase 38, N terminal domain	3n92A01

3BVUA 3DX3A 3EJQA 2B5DX 1QWUA 5KBPA 2FYVA 3EJTA 2ALWA 3BLBA 1TQVA 2OW6A 3DDGA 2F7QA 3D52A 2F7PA 3BUDA 3DX0A 2F18A 3BVWA 1R34A 1HXKA 3BUIA 3DX2A 3EJUA 3BVVA 3DDFA 3D4YA 1O7DA 3DX4A 1TQUA 1R33A 3BUQA 3CZNA 3D50A 3D51A 1HTYA 3N8TA 1HWWA 2F7RA 3EJPA 2F7OA 3LVTA 3N92A 3BUPA 3DX1A 1QWNA 2F1AA 2OW7A 1UFAA 3CV5A 1TQTA 2F1BA 3EJRA 1PS3A 3BUBA 3EJSA 3CZSA 3P0BA 3BVXA 1QX1A 1TQSA 1TQWA 3BVTA 3D4ZA 3N98A
chains in the Genus database with same CATH superfamily

2ZXFA 3EJQA 3EJTA 2F7PA 3DX0A 3BUIA 4KQEA 3DX2A 3EJUA 3DDFA 1TQUA 1R33A 2Q5HA 1HWWA 3EJPA 2OW7A 1PS3A 3P0BA 3BVTA 1TQWA 3D4ZA 1QWUA 1TQVA 3BUDA 2F18A 3BVWA 3BVVA 3CZNA 1HTYA 2F7RA 3N92A 2ZT8A 1K1WA 2PMEA 2F1AA 1TQTA 2F1BA 3BUBA 3CZSA 2Q5IA 5KBPA 3BLBA 1R34A 1HXKA 1K1YA 1K1XA 3D51A 2ZT7A 3N8TA 2F7OA 2ZT5A 3LVTA 3BUPA 1UFAA 3EJRA 3EJSA 3BVXA 3N98A 3BVUA 3DX3A 2B5DX 2FYVA 2ALWA 2OW6A 3DDGA 2PMFA 2F7QA 3D52A 3D4YA 1O7DA 3DX4A 3BUQA 3D50A 2ZT6A 3DX1A 1QWNA 3CV5A 1QX1A 1TQSA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3BVU A;  3DX3 A;  3EJQ A;  2B5D X;  1QWU A;  5KBP A;  2FYV A;  3EJT A;  2ALW A;  3BLB A;  1TQV A;  2OW6 A;  3DDG A;  2F7Q A;  3D52 A;  2F7P A;  3BUD A;  3DX0 A;  2F18 A;  3BVW A;  1R34 A;  1HXK A;  3BUI A;  3DX2 A;  3EJU A;  3BVV A;  3DDF A;  3D4Y A;  1O7D A;  3DX4 A;  1TQU A;  1R33 A;  3BUQ A;  3CZN A;  3D50 A;  3D51 A;  1HTY A;  3N8T A;  1HWW A;  2F7R A;  3EJP A;  2F7O A;  3LVT A;  3N92 A;  3BUP A;  3DX1 A;  1QWN A;  2F1A A;  2OW7 A;  1UFA A;  3CV5 A;  1TQT A;  2F1B A;  3EJR A;  1PS3 A;  3BUB A;  3EJS A;  3CZS A;  3P0B A;  3BVX A;  1QX1 A;  1TQS A;  1TQW A;  3BVT A;  3D4Z A;  3N98 A; 
#chains in the Genus database with same CATH topology
 2ZXF A;  3EJQ A;  3EJT A;  2F7P A;  3DX0 A;  3BUI A;  4KQE A;  3DX2 A;  3EJU A;  3DDF A;  1TQU A;  1R33 A;  2Q5H A;  1HWW A;  3EJP A;  2OW7 A;  1PS3 A;  3P0B A;  3BVT A;  1TQW A;  3D4Z A;  1QWU A;  1TQV A;  3BUD A;  2F18 A;  3BVW A;  3BVV A;  3CZN A;  1HTY A;  2F7R A;  3N92 A;  2ZT8 A;  1K1W A;  2PME A;  2F1A A;  1TQT A;  2F1B A;  3BUB A;  3CZS A;  2Q5I A;  5KBP A;  3BLB A;  1R34 A;  1HXK A;  1K1Y A;  1K1X A;  3D51 A;  2ZT7 A;  3N8T A;  2F7O A;  2ZT5 A;  3LVT A;  3BUP A;  1UFA A;  3EJR A;  3EJS A;  3BVX A;  3N98 A;  3BVU A;  3DX3 A;  2B5D X;  2FYV A;  2ALW A;  2OW6 A;  3DDG A;  2PMF A;  2F7Q A;  3D52 A;  3D4Y A;  1O7D A;  3DX4 A;  3BUQ A;  3D50 A;  2ZT6 A;  3DX1 A;  1QWN A;  3CV5 A;  1QX1 A;  1TQS A; 
#chains in the Genus database with same CATH homology
 3BVU A;  3DX3 A;  3EJQ A;  2B5D X;  1QWU A;  5KBP A;  2FYV A;  3EJT A;  2ALW A;  3BLB A;  1TQV A;  2OW6 A;  3DDG A;  2F7Q A;  3D52 A;  2F7P A;  3BUD A;  3DX0 A;  2F18 A;  3BVW A;  1R34 A;  1HXK A;  3BUI A;  3DX2 A;  3EJU A;  3BVV A;  3DDF A;  3D4Y A;  1O7D A;  3DX4 A;  1TQU A;  1R33 A;  3BUQ A;  3CZN A;  3D50 A;  3D51 A;  1HTY A;  3N8T A;  1HWW A;  2F7R A;  3EJP A;  2F7O A;  3LVT A;  3N92 A;  3BUP A;  3DX1 A;  1QWN A;  2F1A A;  2OW7 A;  1UFA A;  3CV5 A;  1TQT A;  2F1B A;  3EJR A;  1PS3 A;  3BUB A;  3EJS A;  3CZS A;  3P0B A;  3BVX A;  1QX1 A;  1TQS A;  1TQW A;  3BVT A;  3D4Z A;  3N98 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3N92A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations