3N98A

Crystal structure of tk1436, a gh57 branching enzyme from hyperthermophilic archaeon thermococcus kodakaraensis, in complex with glucose and additives
Total Genus 238

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
238
sequence length
550
structure length
550
Chain Sequence
MKGYLTFVLHTHIPYVRKHGKWPFGEEWVFEAISETYIPLLMEFERLRDSGVKFGIVINVTPVLAEQLTDEYMKKAFEEYMERKLKAMEEDLKSGKYDEKAVSYMLNYFRKVYDYWKAINGDIIGKLRELQDQGYVEVITSAATHGYLPLLGRDEAIRAQIANGVATYEKHFGMKPKGIWLPECAYRPAGEWELPGGRKVKRQGIEKFLEEFGLRYFFVESRLIDEGPASNVYGEVLIADTEKTTLRPYWIKGSNVAVFARNRETGHQVWSAHYGYPGDFWYREFHKKAPKSGGQYWRITSKEVGLGEKEFYDPDKAMERVEEHARHFVSLVERLLREHEEKFGEKGIIVAPYDTELFGHWWFEGVKWLGRVLELLYQRGVETPTLSRFLEEYSGEKHEIELPEGSWGANSDHSTWWNEETEWTWPHIYRAEDRMVAIVSRFRGRDELTNRVIEQLARELLILEASDWQFLITTGQAKEYAKRRVLIHSRDFHRLANELVRYVKIGEFDVKLLEELEERDNPFRPVVVGPYVSENPPELEEYVEPPEVPP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transferase
source organism Thermococcus kodakarensis
publication title Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
pubmed doi rcsb
molecule keywords alpha-amylase, GH57 family
total genus 238
structure length 550
sequence length 550
ec nomenclature ec 2.4.1.18: 1,4-alpha-glucan branching enzyme.
pdb deposition date 2010-05-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03065 Glyco_hydro_57 Glycosyl hydrolase family 57
A PF09210 DUF1957 Domain of unknown function (DUF1957)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1430.10 Mainly Alpha Up-down Bundle immunoglobulin/albumin-binding domain-like Families 57/38 glycoside transferase, middle domain 3n98A02
3.20.110.10 Alpha Beta Alpha-Beta Barrel 7-stranded beta/alpha barrel Glycoside hydrolase 38, N terminal domain 3n98A01
1TQWA 1R34A 1TQTA 3BUPA 3DDFA 2F7PA 3EJSA 1TQUA 3EJUA 2FYVA 3DX1A 1QWNA 3D52A 2F1AA 1HTYA 3BVVA 3BUBA 1HXKA 3DDGA 1QX1A 3EJTA 3DX0A 3EJRA 1TQVA 3BVTA 2OW6A 2F7RA 3BVUA 3P0BA 3N98A 3N8TA 3EJQA 2ALWA 2B5DX 2OW7A 1TQSA 1O7DA 3EJPA 3N92A 2F7QA 3DX2A 3LVTA 3D50A 3CZSA 3DX4A 3BUIA 3D4ZA 3BLBA 3BVWA 1QWUA 3BUDA 1UFAA 2F1BA 3CV5A 3DX3A 3BVXA 1R33A 2F18A 5KBPA 1PS3A 3D51A 3CZNA 3D4YA 1HWWA 3BUQA 2F7OA
chains in the Genus database with same CATH superfamily
1R34A 2F7PA 2FYVA 2ZT7A 2F1AA 1HTYA 1HXKA 3EJTA 3EJQA 2ALWA 3EJPA 1K1WA 3N92A 2F7QA 3DX4A 3BUIA 3BLBA 1QWUA 1UFAA 2F1BA 5KBPA 2F18A 1PS3A 1HWWA 3DDFA 1TQUA 3DX1A 2ZT6A 3BUBA 3DDGA 1QX1A 3BVUA 3N8TA 1O7DA 2ZT8A 3CV5A 3DX3A 1R33A 3BUQA 2F7OA 3BUPA 2PMFA 3EJUA 1K1XA 3BVVA 3DX0A 2OW6A 3P0BA 1TQSA 3DX2A 2ZXFA 3BVWA 2Q5HA 4KQEA 3D51A 3CZNA 3D4YA 1TQWA 1TQTA 2Q5IA 2PMEA 1QWNA 3D52A 3EJRA 1TQVA 2ZT5A 3BVTA 2F7RA 3N98A 2B5DX 2OW7A 3LVTA 3D50A 3CZSA 3D4ZA 3BUDA 1K1YA 3EJSA 3BVXA
chains in the Genus database with same CATH topology
1TQWA 1R34A 1TQTA 3BUPA 3DDFA 2F7PA 3EJSA 1TQUA 3EJUA 2FYVA 3DX1A 1QWNA 3D52A 2F1AA 1HTYA 3BVVA 3BUBA 1HXKA 3DDGA 1QX1A 3EJTA 3DX0A 3EJRA 1TQVA 3BVTA 2OW6A 2F7RA 3BVUA 3P0BA 3N98A 3N8TA 3EJQA 2ALWA 2B5DX 2OW7A 1TQSA 1O7DA 3EJPA 3N92A 2F7QA 3DX2A 3LVTA 3D50A 3CZSA 3DX4A 3BUIA 3D4ZA 3BLBA 3BVWA 1QWUA 3BUDA 1UFAA 2F1BA 3CV5A 3DX3A 3BVXA 1R33A 2F18A 5KBPA 1PS3A 3D51A 3CZNA 3D4YA 1HWWA 3BUQA 2F7OA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1TQW A;  1R34 A;  1TQT A;  3BUP A;  3DDF A;  2F7P A;  3EJS A;  1TQU A;  3EJU A;  2FYV A;  3DX1 A;  1QWN A;  3D52 A;  2F1A A;  1HTY A;  3BVV A;  3BUB A;  1HXK A;  3DDG A;  1QX1 A;  3EJT A;  3DX0 A;  3EJR A;  1TQV A;  3BVT A;  2OW6 A;  2F7R A;  3BVU A;  3P0B A;  3N98 A;  3N8T A;  3EJQ A;  2ALW A;  2B5D X;  2OW7 A;  1TQS A;  1O7D A;  3EJP A;  3N92 A;  2F7Q A;  3DX2 A;  3LVT A;  3D50 A;  3CZS A;  3DX4 A;  3BUI A;  3D4Z A;  3BLB A;  3BVW A;  1QWU A;  3BUD A;  1UFA A;  2F1B A;  3CV5 A;  3DX3 A;  3BVX A;  1R33 A;  2F18 A;  5KBP A;  1PS3 A;  3D51 A;  3CZN A;  3D4Y A;  1HWW A;  3BUQ A;  2F7O A; 
#chains in the Genus database with same CATH topology
 1R34 A;  2F7P A;  2FYV A;  2ZT7 A;  2F1A A;  1HTY A;  1HXK A;  3EJT A;  3EJQ A;  2ALW A;  3EJP A;  1K1W A;  3N92 A;  2F7Q A;  3DX4 A;  3BUI A;  3BLB A;  1QWU A;  1UFA A;  2F1B A;  5KBP A;  2F18 A;  1PS3 A;  1HWW A;  3DDF A;  1TQU A;  3DX1 A;  2ZT6 A;  3BUB A;  3DDG A;  1QX1 A;  3BVU A;  3N8T A;  1O7D A;  2ZT8 A;  3CV5 A;  3DX3 A;  1R33 A;  3BUQ A;  2F7O A;  3BUP A;  2PMF A;  3EJU A;  1K1X A;  3BVV A;  3DX0 A;  2OW6 A;  3P0B A;  1TQS A;  3DX2 A;  2ZXF A;  3BVW A;  2Q5H A;  4KQE A;  3D51 A;  3CZN A;  3D4Y A;  1TQW A;  1TQT A;  2Q5I A;  2PME A;  1QWN A;  3D52 A;  3EJR A;  1TQV A;  2ZT5 A;  3BVT A;  2F7R A;  3N98 A;  2B5D X;  2OW7 A;  3LVT A;  3D50 A;  3CZS A;  3D4Z A;  3BUD A;  1K1Y A;  3EJS A;  3BVX A; 
#chains in the Genus database with same CATH homology
 1TQW A;  1R34 A;  1TQT A;  3BUP A;  3DDF A;  2F7P A;  3EJS A;  1TQU A;  3EJU A;  2FYV A;  3DX1 A;  1QWN A;  3D52 A;  2F1A A;  1HTY A;  3BVV A;  3BUB A;  1HXK A;  3DDG A;  1QX1 A;  3EJT A;  3DX0 A;  3EJR A;  1TQV A;  3BVT A;  2OW6 A;  2F7R A;  3BVU A;  3P0B A;  3N98 A;  3N8T A;  3EJQ A;  2ALW A;  2B5D X;  2OW7 A;  1TQS A;  1O7D A;  3EJP A;  3N92 A;  2F7Q A;  3DX2 A;  3LVT A;  3D50 A;  3CZS A;  3DX4 A;  3BUI A;  3D4Z A;  3BLB A;  3BVW A;  1QWU A;  3BUD A;  1UFA A;  2F1B A;  3CV5 A;  3DX3 A;  3BVX A;  1R33 A;  2F18 A;  5KBP A;  1PS3 A;  3D51 A;  3CZN A;  3D4Y A;  1HWW A;  3BUQ A;  2F7O A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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