3P0B | Genus

Total Genus 204

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	204
sequence length	519
structure length	511
Chain Sequence	SHMARFALVLHAHLPYVRAHGMWPFGEETLYEAMAETYLPLIRVLERLRAEGVEAPFTLGITPILAEQLADARIKEGFWAYAKDRLERAQGDYQRYRGTALEASARHQVAFWELTLDHFQRLSGDLVAAFRKAEEGGQVELITSNATHGYSPLLGYDEALWAQIKTGVSTYRRHFAKDPTGFWLPEMAYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQGGEPLSPVESQEATYHVHELESGLRVLARNPETTLQVWSADYGYPGEGLYREFHRKDPLSGLHHWRVTHRKADLAEKAPYDPEAAFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWWYEGVAWLEAVLRLLAQNPKVRPVTAREAVQGPAVRTALPEGSWGRGGDHRVWLNEKTLDYWEKVYRAEGAMREAARRGVLPEGVLRQAMRELLLLEASDWPFLMETGQAEAYARERYEEHARAFFHLLKGASPEELRALEERDNPFPEADPRLYLF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 511 atoms

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511 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Transferase
source organism	Thermus thermophilus
publication title	Thermus thermophilus GLYCOSYL HYDROLASE FAMILY 57 branching enzyme: crystal structure, mechanism of action and products formed rcsb
molecule keywords	TT1467 protein
total genus	204
structure length	511
sequence length	519
ec nomenclature	ec 2.4.1.18: 1,4-alpha-glucan branching enzyme.
pdb deposition date	2010-09-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF03065	Glyco_hydro_57	Glycosyl hydrolase family 57
A	PF09210	DUF1957	Domain of unknown function (DUF1957)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.1430.10	Mainly Alpha	Up-down Bundle	immunoglobulin/albumin-binding domain-like	Families 57/38 glycoside transferase, middle domain	3p0bA02
3.20.110.10	Alpha Beta	Alpha-Beta Barrel	7-stranded beta/alpha barrel	Glycoside hydrolase 38, N terminal domain	3p0bA01

2B5DX 2F1BA 3EJQA 1PS3A 3DX2A 3BLBA 1HWWA 3DX3A 1QWNA 2ALWA 3DX4A 3BUQA 1TQWA 3BVVA 2OW7A 3DDFA 3BUIA 3DX1A 3BVXA 3D4ZA 1TQTA 3BVWA 2F7RA 2OW6A 2F7QA 2F18A 1HTYA 1R34A 3BUDA 1HXKA 2F7OA 1TQUA 3BVUA 3D51A 3EJSA 3CV5A 1O7DA 1R33A 2FYVA 3CZNA 3EJUA 3EJRA 3N92A 5KBPA 1QWUA 1QX1A 3BVTA 3D52A 3D4YA 3EJTA 3BUPA 3N98A 3LVTA 3DDGA 3D50A 3EJPA 3CZSA 1TQVA 2F1AA 1TQSA 3DX0A 3N8TA 3P0BA 1UFAA 3BUBA 2F7PA
chains in the Genus database with same CATH superfamily

2F1BA 1PS3A 1HWWA 3DX3A 2ALWA 3BVXA 1K1XA 2OW6A 2ZT8A 3CV5A 2ZT7A 3N98A 3D50A 3CZSA 3P0BA 3DX2A 1QWNA 2ZT5A 2OW7A 3BUIA 3DX1A 3D4ZA 2F7RA 2F7QA 2F18A 2ZT6A 1HXKA 1TQUA 3BVUA 3EJUA 1O7DA 1R33A 3EJRA 3N92A 1QWUA 1QX1A 3DDGA 2Q5IA 2PMFA 3N8TA 3CZNA 2ZXFA 2B5DX 3BUQA 3BVVA 1K1WA 1K1YA 3BVWA 1HTYA 1R34A 3BUDA 3EJSA 3BVTA 3D52A 3D4YA 3BUPA 3EJPA 1TQVA 1TQSA 3DX0A 2F1AA 1UFAA 3BUBA 3EJQA 3BLBA 3DX4A 1TQWA 3DDFA 1TQTA 4KQEA 2F7OA 3D51A 2PMEA 2FYVA 5KBPA 3EJTA 3LVTA 2Q5HA 2F7PA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2B5D X;  2F1B A;  3EJQ A;  1PS3 A;  3DX2 A;  3BLB A;  1HWW A;  3DX3 A;  1QWN A;  2ALW A;  3DX4 A;  3BUQ A;  1TQW A;  3BVV A;  2OW7 A;  3DDF A;  3BUI A;  3DX1 A;  3BVX A;  3D4Z A;  1TQT A;  3BVW A;  2F7R A;  2OW6 A;  2F7Q A;  2F18 A;  1HTY A;  1R34 A;  3BUD A;  1HXK A;  2F7O A;  1TQU A;  3BVU A;  3D51 A;  3EJS A;  3CV5 A;  1O7D A;  1R33 A;  2FYV A;  3CZN A;  3EJU A;  3EJR A;  3N92 A;  5KBP A;  1QWU A;  1QX1 A;  3BVT A;  3D52 A;  3D4Y A;  3EJT A;  3BUP A;  3N98 A;  3LVT A;  3DDG A;  3D50 A;  3EJP A;  3CZS A;  1TQV A;  2F1A A;  1TQS A;  3DX0 A;  3N8T A;  3P0B A;  1UFA A;  3BUB A;  2F7P A; 
#chains in the Genus database with same CATH topology
 2F1B A;  1PS3 A;  1HWW A;  3DX3 A;  2ALW A;  3BVX A;  1K1X A;  2OW6 A;  2ZT8 A;  3CV5 A;  2ZT7 A;  3N98 A;  3D50 A;  3CZS A;  3P0B A;  3DX2 A;  1QWN A;  2ZT5 A;  2OW7 A;  3BUI A;  3DX1 A;  3D4Z A;  2F7R A;  2F7Q A;  2F18 A;  2ZT6 A;  1HXK A;  1TQU A;  3BVU A;  3EJU A;  1O7D A;  1R33 A;  3EJR A;  3N92 A;  1QWU A;  1QX1 A;  3DDG A;  2Q5I A;  2PMF A;  3N8T A;  3CZN A;  2ZXF A;  2B5D X;  3BUQ A;  3BVV A;  1K1W A;  1K1Y A;  3BVW A;  1HTY A;  1R34 A;  3BUD A;  3EJS A;  3BVT A;  3D52 A;  3D4Y A;  3BUP A;  3EJP A;  1TQV A;  1TQS A;  3DX0 A;  2F1A A;  1UFA A;  3BUB A;  3EJQ A;  3BLB A;  3DX4 A;  1TQW A;  3DDF A;  1TQT A;  4KQE A;  2F7O A;  3D51 A;  2PME A;  2FYV A;  5KBP A;  3EJT A;  3LVT A;  2Q5H A;  2F7P A; 
#chains in the Genus database with same CATH homology
 2B5D X;  2F1B A;  3EJQ A;  1PS3 A;  3DX2 A;  3BLB A;  1HWW A;  3DX3 A;  1QWN A;  2ALW A;  3DX4 A;  3BUQ A;  1TQW A;  3BVV A;  2OW7 A;  3DDF A;  3BUI A;  3DX1 A;  3BVX A;  3D4Z A;  1TQT A;  3BVW A;  2F7R A;  2OW6 A;  2F7Q A;  2F18 A;  1HTY A;  1R34 A;  3BUD A;  1HXK A;  2F7O A;  1TQU A;  3BVU A;  3D51 A;  3EJS A;  3CV5 A;  1O7D A;  1R33 A;  2FYV A;  3CZN A;  3EJU A;  3EJR A;  3N92 A;  5KBP A;  1QWU A;  1QX1 A;  3BVT A;  3D52 A;  3D4Y A;  3EJT A;  3BUP A;  3N98 A;  3LVT A;  3DDG A;  3D50 A;  3EJP A;  3CZS A;  1TQV A;  2F1A A;  1TQS A;  3DX0 A;  3N8T A;  3P0B A;  1UFA A;  3BUB A;  2F7P A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3P0BA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations