3RFIA

Crystal structure of the saposin-like domain of plant aspartic protease from solanum tuberosum
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
104
structure length
80
Chain Sequence
AIVSMECKTIVSQYGEMIWDLLVSGVRPDQVCSQAGLCFVEAPLCTACEMAVVWMQNQLKQEGTKEKVLEYVNQLCEKIP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (0-24)AH3 (66-83)O1 (6-99)AH2 (27-34)Updating...
connected with : NaN
publication title Structure and Mechanism of the Saposin-like Domain of a Plant Aspartic Protease.
pubmed doi rcsb
molecule tags Hydrolase
source organism Solanum tuberosum
molecule keywords Asp
total genus 33
structure length 80
sequence length 104
ec nomenclature
pdb deposition date 2011-04-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03489 SapB_2 Saposin-like type B, region 2
A PF05184 SapB_1 Saposin-like type B, region 1
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.225.10 Mainly Alpha Orthogonal Bundle NK-Lysin Saposin-like 3rfiA00
1N69A 2RB3A 3RFIA 1OF9A 1L9LA 4BITA 2GTGA 2LPNA 1NKLA 2Z9AA 1M12A 2QYPA 2KVDA 3BQPA 2DOBA 2W50A 2W51A 1QDMA 4UEXA 3S63A 1SN6A 4DDJA 2RQYA 4V2OA 2R1QA 2R0RA 3BQQA 2JS9A 2JSAA 3S64A
chains in the Genus database with same CATH superfamily
3EUKE 1N69A 2RB3A 3RFIA 1OF9A 1L9LA 4BITA 3CJLA 2GTGA 2JQ3A 2LPNA 1NKLA 2Z9AA 1M12A 2QYPA 2KVDA 3BQPA 2DOBA 2W50A 2W51A 1QDMA 4UEXA 3S63A 1SN6A 4DDJA 2RQYA 4V2OA 2R1QA 2R0RA 3BQQA 2JS9A 2JSAA 3S64A 3EUJB
chains in the Genus database with same CATH topology
1N69A 2RB3A 3RFIA 1OF9A 1L9LA 4BITA 2GTGA 2LPNA 1NKLA 2Z9AA 1M12A 2QYPA 2KVDA 3BQPA 2DOBA 2W50A 2W51A 1QDMA 4UEXA 3S63A 1SN6A 4DDJA 2RQYA 4V2OA 2R1QA 2R0RA 3BQQA 2JS9A 2JSAA 3S64A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1N69 A;  2RB3 A;  3RFI A;  1OF9 A;  1L9L A;  4BIT A;  2GTG A;  2LPN A;  1NKL A;  2Z9A A;  1M12 A;  2QYP A;  2KVD A;  3BQP A;  2DOB A;  2W50 A;  2W51 A;  1QDM A;  4UEX A;  3S63 A;  1SN6 A;  4DDJ A;  2RQY A;  4V2O A;  2R1Q A;  2R0R A;  3BQQ A;  2JS9 A;  2JSA A;  3S64 A; 
#chains in the Genus database with same CATH topology
 3EUK E;  1N69 A;  2RB3 A;  3RFI A;  1OF9 A;  1L9L A;  4BIT A;  3CJL A;  2GTG A;  2JQ3 A;  2LPN A;  1NKL A;  2Z9A A;  1M12 A;  2QYP A;  2KVD A;  3BQP A;  2DOB A;  2W50 A;  2W51 A;  1QDM A;  4UEX A;  3S63 A;  1SN6 A;  4DDJ A;  2RQY A;  4V2O A;  2R1Q A;  2R0R A;  3BQQ A;  2JS9 A;  2JSA A;  3S64 A;  3EUJ B; 
#chains in the Genus database with same CATH homology
 1N69 A;  2RB3 A;  3RFI A;  1OF9 A;  1L9L A;  4BIT A;  2GTG A;  2LPN A;  1NKL A;  2Z9A A;  1M12 A;  2QYP A;  2KVD A;  3BQP A;  2DOB A;  2W50 A;  2W51 A;  1QDM A;  4UEX A;  3S63 A;  1SN6 A;  4DDJ A;  2RQY A;  4V2O A;  2R1Q A;  2R0R A;  3BQQ A;  2JS9 A;  2JSA A;  3S64 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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