3USHA

Crystal structure of the q2s0r5 protein from salinibacter ruber, northeast structural genomics consortium target srr207
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
118
structure length
118
Chain Sequence
SQNVLGGVLRACSMDPETGFYRDGHCRTGPRDTGSHVVCAEMTEAFLEYTKRQGNDLMTPRPEMDFPGLEPGDRWCLCAARWREAMEAGVAPPVVLAATSEAALKAVDLEVLKAHAVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Q2S0R5 protein from Salinibacter ruber, Northeast Structural Genomics Consortium Target SrR207
rcsb
molecule tags Structural genomics, unknown function
source organism Salinibacter ruber
molecule keywords Uncharacterized protein
total genus 30
structure length 118
sequence length 118
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09996 DUF2237 Uncharacterized protein conserved in bacteria (DUF2237)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.110 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Phenylalanyl-tRNA Synthetase; Chain B, domain 1 3ushA00
4IOHA 3USHA
chains in the Genus database with same CATH superfamily
4P74A 1KVNA 3AXSA 4P73A 4XCOA 2LQ3A 4P71A 1MFQB 2AMCB 2AKWB 2IY5B 4DDWA 2ALYB 2RHSB 1KVVA 1JJCB 1B7YB 1L9AA 4P75A 1PYSB 3AXTA 1B70B 4DDVA 1ND9A 3TEHB 2RHQB 3NDBA 3DLVA 3HFZB 3DLUA 2HG7A 3KTVB 2CXIA 2EJUA 4DDUA 4P3EB 5M73B 1LNGA 1EIYB 3PCOB 4IOHA 4P72A 3L4GB 3KTWA 1JIDA 3USHA 4DDTA 2EJTA 2DULA 2YTZA 4TVAB 2V3CA
chains in the Genus database with same CATH topology
4P74A 3AXSA 4P73A 2LQ3A 4P71A 2AMCB 2AKWB 2IY5B 4DDWA 2ALYB 2RHSB 1JJCB 1B7YB 4P75A 1PYSB 3AXTA 1B70B 4DDVA 3TEHB 2RHQB 3HFZB 2CXIA 2EJUA 4DDUA 1EIYB 3PCOB 4IOHA 4P72A 3L4GB 3USHA 4DDTA 2EJTA 2DULA 2YTZA 4TVAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IOH A;  3USH A; 
#chains in the Genus database with same CATH topology
 4P74 A;  1KVN A;  3AXS A;  4P73 A;  4XCO A;  2LQ3 A;  4P71 A;  1MFQ B;  2AMC B;  2AKW B;  2IY5 B;  4DDW A;  2ALY B;  2RHS B;  1KVV A;  1JJC B;  1B7Y B;  1L9A A;  4P75 A;  1PYS B;  3AXT A;  1B70 B;  4DDV A;  1ND9 A;  3TEH B;  2RHQ B;  3NDB A;  3DLV A;  3HFZ B;  3DLU A;  2HG7 A;  3KTV B;  2CXI A;  2EJU A;  4DDU A;  4P3E B;  5M73 B;  1LNG A;  1EIY B;  3PCO B;  4IOH A;  4P72 A;  3L4G B;  3KTW A;  1JID A;  3USH A;  4DDT A;  2EJT A;  2DUL A;  2YTZ A;  4TVA B;  2V3C A; 
#chains in the Genus database with same CATH homology
 4P74 A;  3AXS A;  4P73 A;  2LQ3 A;  4P71 A;  2AMC B;  2AKW B;  2IY5 B;  4DDW A;  2ALY B;  2RHS B;  1JJC B;  1B7Y B;  4P75 A;  1PYS B;  3AXT A;  1B70 B;  4DDV A;  3TEH B;  2RHQ B;  3HFZ B;  2CXI A;  2EJU A;  4DDU A;  1EIY B;  3PCO B;  4IOH A;  4P72 A;  3L4G B;  3USH A;  4DDT A;  2EJT A;  2DUL A;  2YTZ A;  4TVA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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