3USHA

Crystal structure of the q2s0r5 protein from salinibacter ruber, northeast structural genomics consortium target srr207
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
118
structure length
118
Chain Sequence
SQNVLGGVLRACSMDPETGFYRDGHCRTGPRDTGSHVVCAEMTEAFLEYTKRQGNDLMTPRPEMDFPGLEPGDRWCLCAARWREAMEAGVAPPVVLAATSEAALKAVDLEVLKAHAVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of the Q2S0R5 protein from Salinibacter ruber, Northeast Structural Genomics Consortium Target SrR207
rcsb
molecule tags Structural genomics, unknown function
source organism Salinibacter ruber
molecule keywords Uncharacterized protein
total genus 30
structure length 118
sequence length 118
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09996 DUF2237 Uncharacterized protein conserved in bacteria (DUF2237)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.56.110 Alpha Beta 2-Layer Sandwich Phenylalanyl-tRNA Synthetase; Chain B, domain 1 Phenylalanyl-tRNA Synthetase; Chain B, domain 1 3ushA00
3USHA 4IOHA
chains in the Genus database with same CATH superfamily
4DDWA 4TVAB 2YTZA 1PYSB 2RHQB 3DLUA 4IOHA 4P71A 2HG7A 4P75A 1EIYB 2V3CA 4DDVA 2EJTA 4DDUA 4P74A 1KVVA 3DLVA 1ND9A 4XCOA 2IY5B 1KVNA 4P72A 1LNGA 2LQ3A 3AXTA 2DULA 1B70B 2EJUA 3TEHB 1JIDA 3HFZB 4P73A 3KTWA 2CXIA 3PCOB 3USHA 1MFQB 1B7YB 5M73B 2AKWB 1L9AA 3L4GB 2ALYB 3NDBA 3AXSA 2RHSB 4DDTA 3KTVB 4P3EB 1JJCB 2AMCB
chains in the Genus database with same CATH topology
4DDWA 4TVAB 2YTZA 1PYSB 2RHQB 4IOHA 4P71A 4P75A 1EIYB 4DDVA 2EJTA 4DDUA 4P74A 2IY5B 4P72A 1JJCB 2LQ3A 3AXTA 2DULA 1B70B 2EJUA 3TEHB 4P73A 2CXIA 3PCOB 3USHA 1B7YB 2AKWB 3L4GB 2ALYB 3AXSA 2RHSB 4DDTA 3HFZB 2AMCB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3USH A;  4IOH A; 
#chains in the Genus database with same CATH topology
 4DDW A;  4TVA B;  2YTZ A;  1PYS B;  2RHQ B;  3DLU A;  4IOH A;  4P71 A;  2HG7 A;  4P75 A;  1EIY B;  2V3C A;  4DDV A;  2EJT A;  4DDU A;  4P74 A;  1KVV A;  3DLV A;  1ND9 A;  4XCO A;  2IY5 B;  1KVN A;  4P72 A;  1LNG A;  2LQ3 A;  3AXT A;  2DUL A;  1B70 B;  2EJU A;  3TEH B;  1JID A;  3HFZ B;  4P73 A;  3KTW A;  2CXI A;  3PCO B;  3USH A;  1MFQ B;  1B7Y B;  5M73 B;  2AKW B;  1L9A A;  3L4G B;  2ALY B;  3NDB A;  3AXS A;  2RHS B;  4DDT A;  3KTV B;  4P3E B;  1JJC B;  2AMC B; 
#chains in the Genus database with same CATH homology
 4DDW A;  4TVA B;  2YTZ A;  1PYS B;  2RHQ B;  4IOH A;  4P71 A;  4P75 A;  1EIY B;  4DDV A;  2EJT A;  4DDU A;  4P74 A;  2IY5 B;  4P72 A;  1JJC B;  2LQ3 A;  3AXT A;  2DUL A;  1B70 B;  2EJU A;  3TEH B;  4P73 A;  2CXI A;  3PCO B;  3USH A;  1B7Y B;  2AKW B;  3L4G B;  2ALY B;  3AXS A;  2RHS B;  4DDT A;  3HFZ B;  2AMC B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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