The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
93
|
sequence length |
384
|
structure length |
314
|
Chain Sequence |
VKLFRASEPILSVLMWGVNHTINELSNVPVPVMLMPDDFKAYSKIKVDNHLFNKENLPSRFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINRFLTTYDRRFVIKTVSSEDVAEMHNILKKYHQFIVECHGNTLLPQFLGMYRLTVDGVETYMVVTRNVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLEKLKRDVEFLAQLKIMDYSLLVGIHDVDRAEQEEMEVEERAGPGEFDPSVDVYAMKSHESSPKKEVYFMAIIDILVNPEQYSKRFNEFMSNILT
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Transferase
|
| molecule keywords |
Phosphatidylinositol 5-phosphate 4-kinase type-2 beta
|
| publication title |
The Lipid Kinase PI5P4K beta Is an Intracellular GTP Sensor for Metabolism and Tumorigenesis
pubmed doi rcsb |
| source organism |
Homo sapiens
|
| total genus |
93
|
| structure length |
314
|
| sequence length |
384
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
2.7.1.149: 1-phosphatidylinositol-5-phosphate 4-kinase. |
| pdb deposition date | 2014-10-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01504 | PIP5K | Phosphatidylinositol-4-phosphate 5-Kinase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Phosphatidylinositol Phosphate Kinase II Beta | Phosphatidylinositol Phosphate Kinase II Beta | ||
| Alpha Beta | 2-Layer Sandwich | Phosphatidylinositol Phosphate Kinase Iibeta; Chain: A, domain 2 | 2-Layer Sandwich |
#chains in the Genus database with same CATH superfamily 5E3T A; 3X0A A; 2GK9 A; 3X06 A; 3X02 A; 3X09 A; 1BO1 A; 3X07 A; 2YBX A; 5E3U A; 5E3S A; 3X04 A; 4TZ7 A; 3X01 A; 3X03 A; 3X0C A; 3WZZ A; 3X05 A; 3X08 A; 3X0B A; #chains in the Genus database with same CATH topology 5E3T A; 3X0A A; 2GK9 A; 3X06 A; 3X02 A; 3X09 A; 1BO1 A; 3X07 A; 2YBX A; 5E3U A; 5E3S A; 3X04 A; 4TZ7 A; 3X01 A; 3X03 A; 3X0C A; 3WZZ A; 3X05 A; 3X08 A; 3X0B A; #chains in the Genus database with same CATH homology 5E3T A; 3X0A A; 2GK9 A; 3X06 A; 3X02 A; 3X09 A; 1BO1 A; 3X07 A; 2YBX A; 5E3U A; 5E3S A; 3X04 A; 4TZ7 A; 3X01 A; 3X03 A; 3X0C A; 3WZZ A; 3X05 A; 3X08 A; 3X0B A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
