3ZPM | Genus

Total Genus 42

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	42
sequence length	211
structure length	211
Chain Sequence	AMAQQIPPEVSSQITDALTQGLLDGNFLSLLNAINLEGLLNTILDQVTGLLNILVGPLLGPSDAEIKLQDTRLLQLSLEFSPDSKGIDIWIPLELSVYLKLLILEPLTLYVRTDIRVQLRLESDEDGKYRLAFGHCSLLPRAIELQSGNPLSLPVNAVLGTIENALGNFITEDLGAGLCPTLNSLVSNLDLQLVNNLINLILDRANVDLSV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Surfactant protein
source organism	Equus caballus
publication title	The structure of latherin, a surfactant allergen protein from horse sweat and saliva. pubmed doi rcsb
molecule keywords	LATHERIN
total genus	42
structure length	211
sequence length	211
ec nomenclature
pdb deposition date	2013-02-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01273	LBP_BPI_CETP	LBP / BPI / CETP family, N-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.15.10.10	Alpha Beta	Super Roll	Bactericidal permeability-increasing protein; domain 1	Bactericidal permeability-increasing protein; domain 1	3zpmA00

1EWFA 5I7KA 4F2AA 4KGHA 1BP1A 2OBDA 5I7LA 3ZPMA 5I7JA 4KGOA 4EWSA 4M4DA
chains in the Genus database with same CATH superfamily

1USUB 3E8TA 3UV1A 3ZPMA 3AOTA 1EWFA 3AOSA 2OBDA 3L6IA 3A1ZA 5I7JA 2RCKA 5I7KA 4F2AA 5I7LA 3E8WA 4KGOA 4M4DA 3N72A 4KGHA 1BP1A 2RQFA 1USVB 4EWSA 3H4ZA 4G0SA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1EWF A;  5I7K A;  4F2A A;  4KGH A;  1BP1 A;  2OBD A;  5I7L A;  3ZPM A;  5I7J A;  4KGO A;  4EWS A;  4M4D A; 
#chains in the Genus database with same CATH topology
 1USU B;  3E8T A;  3UV1 A;  3ZPM A;  3AOT A;  1EWF A;  3AOS A;  2OBD A;  3L6I A;  3A1Z A;  5I7J A;  2RCK A;  5I7K A;  4F2A A;  5I7L A;  3E8W A;  4KGO A;  4M4D A;  3N72 A;  4KGH A;  1BP1 A;  2RQF A;  1USV B;  4EWS A;  3H4Z A;  4G0S A; 
#chains in the Genus database with same CATH homology
 1USU B;  3E8T A;  3UV1 A;  3ZPM A;  3AOT A;  1EWF A;  3AOS A;  2OBD A;  3L6I A;  3A1Z A;  5I7J A;  2RCK A;  5I7K A;  4F2A A;  5I7L A;  3E8W A;  4KGO A;  4M4D A;  3N72 A;  4KGH A;  1BP1 A;  2RQF A;  1USV B;  4EWS A;  3H4Z A;  4G0S A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3ZPMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations