3A1ZA

Crystal structure of juvenile hormone binding protein from silkworm
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
216
structure length
208
Chain Sequence
KPCKLGDMQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNITGLKNQQISDFQMDTKAKTVLLKTKADLHIVGDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDLSSALEKDSGEPLKTLRQAAICKIAEACYISVVHNIRASAKILPASSFFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Hemolymph juvenile hormone binding protein
publication title Crystal structure of silkworm Bombyx mori JHBP in complex with 2-methyl-2,4-pentanediol: plasticity of JH-binding pocket and ligand-induced conformational change of the second cavity in JHBP
pubmed doi rcsb
source organism Bombyx mori
total genus 55
structure length 208
sequence length 216
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2009-04-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.30 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 3a1zA00
3A1ZA 4G0SA 2RCKA 3E8WA 3AOSA 3E8TA 3AOTA 2RQFA
chains in the Genus database with same CATH superfamily
3A1ZA 4KGOA 5I7LA 3N72A 3AOSA 3E8WA 1EWFA 2OBDA 1BP1A 5I7JA 4M4DA 3UV1A 3E8TA 1USVB 4KGHA 3ZPMA 4G0SA 3L6IA 4F2AA 2RCKA 1USUB 3H4ZA 4EWSA 3AOTA 5I7KA 2RQFA
chains in the Genus database with same CATH topology
3A1ZA 4KGOA 5I7LA 3N72A 3AOSA 3E8WA 1EWFA 2OBDA 1BP1A 5I7JA 4M4DA 3UV1A 3E8TA 1USVB 4KGHA 3ZPMA 4G0SA 3L6IA 4F2AA 2RCKA 1USUB 3H4ZA 4EWSA 3AOTA 5I7KA 2RQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A1Z A;  4G0S A;  2RCK A;  3E8W A;  3AOS A;  3E8T A;  3AOT A;  2RQF A; 
#chains in the Genus database with same CATH topology
 3A1Z A;  4KGO A;  5I7L A;  3N72 A;  3AOS A;  3E8W A;  1EWF A;  2OBD A;  1BP1 A;  5I7J A;  4M4D A;  3UV1 A;  3E8T A;  1USV B;  4KGH A;  3ZPM A;  4G0S A;  3L6I A;  4F2A A;  2RCK A;  1USU B;  3H4Z A;  4EWS A;  3AOT A;  5I7K A;  2RQF A; 
#chains in the Genus database with same CATH homology
 3A1Z A;  4KGO A;  5I7L A;  3N72 A;  3AOS A;  3E8W A;  1EWF A;  2OBD A;  1BP1 A;  5I7J A;  4M4D A;  3UV1 A;  3E8T A;  1USV B;  4KGH A;  3ZPM A;  4G0S A;  3L6I A;  4F2A A;  2RCK A;  1USU B;  3H4Z A;  4EWS A;  3AOT A;  5I7K A;  2RQF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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