3AOS | Genus

Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	57
sequence length	221
structure length	221
Chain Sequence	ALLKPCKLGDMQCLSSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNITGLKNQQISDFQMDTKAKTVLLKTKADLHIVGDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDLSSALEKDSGNNSLEPDMEPLKTLRQAAICKIAEACYISVVHNIRASAKILPASSFFENL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfe3ef1cae500387e9ce89a/pdb.gz): 1188 ms

reading 221 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

221 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 21 ms

Adding embedded #jmolscript: select ({0:220});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hormone binding protein
source organism	Bombyx mori
publication title	Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori pubmed doi rcsb
molecule keywords	Hemolymph juvenile hormone binding protein
total genus	57
structure length	221
sequence length	221
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-10-06

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.15.10.30	Alpha Beta	Super Roll	Bactericidal permeability-increasing protein; domain 1	Bactericidal permeability-increasing protein; domain 1	3aosA00

3AOTA 2RQFA 3E8WA 3A1ZA 3AOSA 2RCKA 3E8TA 4G0SA
chains in the Genus database with same CATH superfamily

5I7LA 1BP1A 4G0SA 5I7JA 1USUB 3AOTA 1EWFA 3A1ZA 2RCKA 4KGOA 4F2AA 3L6IA 3N72A 2RQFA 3E8WA 3H4ZA 4KGHA 4EWSA 1USVB 3UV1A 5I7KA 3AOSA 3E8TA 3ZPMA 4M4DA 2OBDA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3AOT A;  2RQF A;  3E8W A;  3A1Z A;  3AOS A;  2RCK A;  3E8T A;  4G0S A; 
#chains in the Genus database with same CATH topology
 5I7L A;  1BP1 A;  4G0S A;  5I7J A;  1USU B;  3AOT A;  1EWF A;  3A1Z A;  2RCK A;  4KGO A;  4F2A A;  3L6I A;  3N72 A;  2RQF A;  3E8W A;  3H4Z A;  4KGH A;  4EWS A;  1USV B;  3UV1 A;  5I7K A;  3AOS A;  3E8T A;  3ZPM A;  4M4D A;  2OBD A; 
#chains in the Genus database with same CATH homology
 5I7L A;  1BP1 A;  4G0S A;  5I7J A;  1USU B;  3AOT A;  1EWF A;  3A1Z A;  2RCK A;  4KGO A;  4F2A A;  3L6I A;  3N72 A;  2RQF A;  3E8W A;  3H4Z A;  4KGH A;  4EWS A;  1USV B;  3UV1 A;  5I7K A;  3AOS A;  3E8T A;  3ZPM A;  4M4D A;  2OBD A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3AOSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN