3AOTA

Crystal structure of juvenile hormone binding protein from silkworm in its apo form
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
203
structure length
203
Chain Sequence
SSATEQFLEKTSKGIPQYDIWPIDPLVVTSLDVIAPSDAGIVIRFKNLNITGLKNQQISDFQMDTKAKTVLLKTKADLHIVGDIVIELTEQSKSFTGLYTADTNVIGAVRYGYNLKNDDNGVQHFEVQPETFTCESIGEPKITLSSDLSSALEKDSGNNSLEPDMEPLKTLRQAAICKIAEACYISVVHNIRASAKILPASSF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone binding protein
molecule keywords Hemolymph juvenile hormone binding protein
publication title Structural mechanism of JH delivery in hemolymph by JHBP of silkworm, Bombyx mori.
pubmed doi rcsb
source organism Bombyx mori
total genus 57
structure length 203
sequence length 203
ec nomenclature
pdb deposition date 2010-10-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.30 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 3aotA00
2RQFA 3AOTA 3AOSA 3A1ZA 4G0SA 3E8TA 3E8WA 2RCKA
chains in the Genus database with same CATH superfamily
4KGOA 3N72A 3UV1A 3E8TA 3AOTA 4G0SA 5I7JA 1EWFA 3E8WA 4F2AA 1USUB 1USVB 3A1ZA 3L6IA 2OBDA 2RCKA 2RQFA 4KGHA 3ZPMA 5I7LA 1BP1A 3AOSA 5I7KA 4EWSA 4M4DA 3H4ZA
chains in the Genus database with same CATH topology
4KGOA 3N72A 3UV1A 3E8TA 3AOTA 4G0SA 5I7JA 1EWFA 3E8WA 4F2AA 1USUB 1USVB 3A1ZA 3L6IA 2OBDA 2RCKA 2RQFA 4KGHA 3ZPMA 5I7LA 1BP1A 3AOSA 5I7KA 4EWSA 4M4DA 3H4ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQF A;  3AOT A;  3AOS A;  3A1Z A;  4G0S A;  3E8T A;  3E8W A;  2RCK A; 
#chains in the Genus database with same CATH topology
 4KGO A;  3N72 A;  3UV1 A;  3E8T A;  3AOT A;  4G0S A;  5I7J A;  1EWF A;  3E8W A;  4F2A A;  1USU B;  1USV B;  3A1Z A;  3L6I A;  2OBD A;  2RCK A;  2RQF A;  4KGH A;  3ZPM A;  5I7L A;  1BP1 A;  3AOS A;  5I7K A;  4EWS A;  4M4D A;  3H4Z A; 
#chains in the Genus database with same CATH homology
 4KGO A;  3N72 A;  3UV1 A;  3E8T A;  3AOT A;  4G0S A;  5I7J A;  1EWF A;  3E8W A;  4F2A A;  1USU B;  1USV B;  3A1Z A;  3L6I A;  2OBD A;  2RCK A;  2RQF A;  4KGH A;  3ZPM A;  5I7L A;  1BP1 A;  3AOS A;  5I7K A;  4EWS A;  4M4D A;  3H4Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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