3E8WA

Crystal structure of epiphyas postvittana takeout 1
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
219
structure length
219
Chain Sequence
VLPVEKCNLEDSACMTSAFQQALPTFVAGLPDHGVEVMDVLDLDDFAFDLSGLQFTLKEGKLKGLKGAVIDNVKWDLKKKNIEVDFHLDATVKGHYTAGGRILILPITGDGQMKLKLKNIHIHLVVSYEMEKDAEGVDHVIFKKYTVTFDVKDNAQFGLTNLFNGNKELSDTMLTFLNQNWKQVSEEFGKPVMEAAAKKIFKNIKHFLAKVPIAEIANV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
source organism Epiphyas postvittana
publication title Crystal structure of Epiphyas postvittana takeout 1 with bound ubiquinone supports a role as ligand carriers for takeout proteins in insects
pubmed doi rcsb
molecule keywords Takeout-like protein 1
total genus 62
structure length 219
sequence length 219
ec nomenclature
pdb deposition date 2008-08-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.30 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 3e8wA00
3E8TA 3AOSA 2RQFA 4G0SA 3A1ZA 3E8WA 2RCKA 3AOTA
chains in the Genus database with same CATH superfamily
3L6IA 4KGHA 4F2AA 3UV1A 4KGOA 4G0SA 3AOSA 4EWSA 2RCKA 3N72A 1USUB 3H4ZA 4M4DA 2OBDA 3ZPMA 1EWFA 3E8TA 1BP1A 5I7JA 2RQFA 3A1ZA 5I7KA 3E8WA 1USVB 5I7LA 3AOTA
chains in the Genus database with same CATH topology
3L6IA 4KGHA 4F2AA 3UV1A 4KGOA 4G0SA 3AOSA 4EWSA 2RCKA 3N72A 1USUB 3H4ZA 4M4DA 2OBDA 3ZPMA 1EWFA 3E8TA 1BP1A 5I7JA 2RQFA 3A1ZA 5I7KA 3E8WA 1USVB 5I7LA 3AOTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3E8T A;  3AOS A;  2RQF A;  4G0S A;  3A1Z A;  3E8W A;  2RCK A;  3AOT A; 
#chains in the Genus database with same CATH topology
 3L6I A;  4KGH A;  4F2A A;  3UV1 A;  4KGO A;  4G0S A;  3AOS A;  4EWS A;  2RCK A;  3N72 A;  1USU B;  3H4Z A;  4M4D A;  2OBD A;  3ZPM A;  1EWF A;  3E8T A;  1BP1 A;  5I7J A;  2RQF A;  3A1Z A;  5I7K A;  3E8W A;  1USV B;  5I7L A;  3AOT A; 
#chains in the Genus database with same CATH homology
 3L6I A;  4KGH A;  4F2A A;  3UV1 A;  4KGO A;  4G0S A;  3AOS A;  4EWS A;  2RCK A;  3N72 A;  1USU B;  3H4Z A;  4M4D A;  2OBD A;  3ZPM A;  1EWF A;  3E8T A;  1BP1 A;  5I7J A;  2RQF A;  3A1Z A;  5I7K A;  3E8W A;  1USV B;  5I7L A;  3AOT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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