3E8WA

Crystal structure of epiphyas postvittana takeout 1
Total Genus 62
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
219
structure length
219
Chain Sequence
VLPVEKCNLEDSACMTSAFQQALPTFVAGLPDHGVEVMDVLDLDDFAFDLSGLQFTLKEGKLKGLKGAVIDNVKWDLKKKNIEVDFHLDATVKGHYTAGGRILILPITGDGQMKLKLKNIHIHLVVSYEMEKDAEGVDHVIFKKYTVTFDVKDNAQFGLTNLFNGNKELSDTMLTFLNQNWKQVSEEFGKPVMEAAAKKIFKNIKHFLAKVPIAEIANV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transport protein
molecule keywords Takeout-like protein 1
publication title Crystal structure of Epiphyas postvittana takeout 1 with bound ubiquinone supports a role as ligand carriers for takeout proteins in insects
pubmed doi rcsb
source organism Epiphyas postvittana
total genus 62
structure length 219
sequence length 219
ec nomenclature
pdb deposition date 2008-08-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.30 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 3e8wA00
2RQFA 3AOSA 3A1ZA 3AOTA 4G0SA 2RCKA 3E8TA 3E8WA
chains in the Genus database with same CATH superfamily
4EWSA 3H4ZA 3N72A 3L6IA 1EWFA 3ZPMA 3AOSA 4KGOA 5I7JA 1BP1A 3A1ZA 5I7KA 4M4DA 2RQFA 4KGHA 3E8TA 4F2AA 5I7LA 1USUB 1USVB 3UV1A 2OBDA 3AOTA 4G0SA 2RCKA 3E8WA
chains in the Genus database with same CATH topology
4EWSA 3H4ZA 3N72A 3L6IA 1EWFA 3ZPMA 3AOSA 4KGOA 5I7JA 1BP1A 3A1ZA 5I7KA 4M4DA 2RQFA 4KGHA 3E8TA 4F2AA 5I7LA 1USUB 1USVB 3UV1A 2OBDA 3AOTA 4G0SA 2RCKA 3E8WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RQF A;  3AOS A;  3A1Z A;  3AOT A;  4G0S A;  2RCK A;  3E8T A;  3E8W A; 
#chains in the Genus database with same CATH topology
 4EWS A;  3H4Z A;  3N72 A;  3L6I A;  1EWF A;  3ZPM A;  3AOS A;  4KGO A;  5I7J A;  1BP1 A;  3A1Z A;  5I7K A;  4M4D A;  2RQF A;  4KGH A;  3E8T A;  4F2A A;  5I7L A;  1USU B;  1USV B;  3UV1 A;  2OBD A;  3AOT A;  4G0S A;  2RCK A;  3E8W A; 
#chains in the Genus database with same CATH homology
 4EWS A;  3H4Z A;  3N72 A;  3L6I A;  1EWF A;  3ZPM A;  3AOS A;  4KGO A;  5I7J A;  1BP1 A;  3A1Z A;  5I7K A;  4M4D A;  2RQF A;  4KGH A;  3E8T A;  4F2A A;  5I7L A;  1USU B;  1USV B;  3UV1 A;  2OBD A;  3AOT A;  4G0S A;  2RCK A;  3E8W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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