3L6IA

Crystal structure of the uncharacterized lipoprotein yceb from e. coli at the resolution 2.0a. northeast structural genomics consortium target er542
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
171
structure length
171
Chain Sequence
HHSHMNQLTQYTITEQEINQSLAKHNNFSKDIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALPVFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGSQGEAMAKKLAKGIEVKPGEIVIPFT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structure genomics, unknown function
molecule keywords Uncharacterized lipoprotein yceB
publication title Crystal structure of the uncharacterized lipoprotein yceb from e. coli at the resolution 2.0a. northeast structural genomics consortium target er542
rcsb
source organism Escherichia coli
total genus 38
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2009-12-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07273 DUF1439 Protein of unknown function (DUF1439)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.15.10.40 Alpha Beta Super Roll Bactericidal permeability-increasing protein; domain 1 Bactericidal permeability-increasing protein; domain 1 3l6iA00
3L6IA
chains in the Genus database with same CATH superfamily
3A1ZA 4KGOA 5I7LA 3N72A 3AOSA 3E8WA 1EWFA 2OBDA 1BP1A 5I7JA 4M4DA 3UV1A 3E8TA 1USVB 4KGHA 3ZPMA 4G0SA 3L6IA 4F2AA 2RCKA 1USUB 3H4ZA 4EWSA 3AOTA 5I7KA 2RQFA
chains in the Genus database with same CATH topology
3A1ZA 4KGOA 5I7LA 3N72A 3AOSA 3E8WA 1EWFA 2OBDA 1BP1A 5I7JA 4M4DA 3UV1A 3E8TA 1USVB 4KGHA 3ZPMA 4G0SA 3L6IA 4F2AA 2RCKA 1USUB 3H4ZA 4EWSA 3AOTA 5I7KA 2RQFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3L6I A; 
#chains in the Genus database with same CATH topology
 3A1Z A;  4KGO A;  5I7L A;  3N72 A;  3AOS A;  3E8W A;  1EWF A;  2OBD A;  1BP1 A;  5I7J A;  4M4D A;  3UV1 A;  3E8T A;  1USV B;  4KGH A;  3ZPM A;  4G0S A;  3L6I A;  4F2A A;  2RCK A;  1USU B;  3H4Z A;  4EWS A;  3AOT A;  5I7K A;  2RQF A; 
#chains in the Genus database with same CATH homology
 3A1Z A;  4KGO A;  5I7L A;  3N72 A;  3AOS A;  3E8W A;  1EWF A;  2OBD A;  1BP1 A;  5I7J A;  4M4D A;  3UV1 A;  3E8T A;  1USV B;  4KGH A;  3ZPM A;  4G0S A;  3L6I A;  4F2A A;  2RCK A;  1USU B;  3H4Z A;  4EWS A;  3AOT A;  5I7K A;  2RQF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...